Methylorubrum extorquens DM4: METDI5315
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Entry
METDI5315 CDS
T00947
Symbol
rumA
Name
(GenBank) 23S rRNA (Uracil-5-)-methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mdi
Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mdi03009
]
METDI5315 (rumA)
Enzymes [BR:
mdi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
METDI5315 (rumA)
Ribosome biogenesis [BR:
mdi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
METDI5315 (rumA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
MTS
Methyltransf_25
Cons_hypoth95
PrmA
Motif
Other DBs
NCBI-ProteinID:
CAX26928
UniProt:
C7CLS9
LinkDB
All DBs
Position
5245479..5246762
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AA seq
427 aa
AA seq
DB search
MSDVIEETLTIARLGARGDGLTEGGLAVPGALPGERVRVQRGDRIGTLIAVEEASPDRIA
PFCPYFSACGGCAVQHLAPAPYAEWKRGIVAGALGQARIETTLMPLLDAQGEGRRRITLH
VREIEGRARAGLMAARSHALVPIDHCPITVPSLHRAPAVAEALAAPLGHGRKPLDIAATA
TVTGLDIDIRGHGQVSDGVRGVLTRLAGELDLARLSIHGDVVVERRPPAVGEGPARRVPS
PGSFLQATQAGEAILTALVLEAMDEGKAKVRRVGDLFCGSGPFALTLAAGAREVHAADGE
AAAITALTRAYRAGAGYARITAEARDLFRRPLLGPELDALDAVVFDPPRAGAEAQVRRIA
ESKVPLVVGVACDPGTFARDAATLIAGGYRLERVTPVDQFAWSAHVELVGVFRKQAKVTG
RTLRRPR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgtgatcgaagagactctgaccatcgcccggctcggcgcccgcggcgacggc
ctcaccgagggcgggctggcggtgcccggtgccctgcccggcgagcgcgtgcgggtgcag
cgcggcgaccgcatcggcacgctgatcgccgtggaggaggcgtcgccggatcggatcgcg
ccgttctgcccgtatttctcggcctgcggcggctgcgccgtgcagcacctcgcccccgcc
ccttacgcggagtggaagcgcggcatcgtcgccggggcgctggggcaggcgcgcatcgag
accacgctgatgccgctcctcgacgcgcagggagagggccggcggcggatcaccctgcat
gtgcgcgagatcgagggccgggcgcgggccgggctgatggccgcgcgcagccacgcgctg
gtgccgatcgaccattgcccgatcaccgtgcctagcctgcaccgggcgccggccgtcgcg
gaggcgctcgccgccccgctcgggcacggccgcaagccgctcgacatcgccgccaccgcc
accgtaaccggcctcgacatcgacatccgcggccacggacaggtgagcgacggcgtccgc
ggcgtcctgactcggctcgccggcgaactcgacctcgcccgtttgtcgatccacggcgac
gtcgtggtcgagcgccgcccgcccgcggtcggcgagggcccggcccggcgcgtgccctcg
cccggcagctttctccaggcgacacaggccggcgaggcgatcctgaccgcgctggtgctg
gaggccatggacgagggcaaggccaaggtgcggcgcgtcggcgacctgttctgcggcagc
ggtcccttcgccctgacgctcgctgcgggagcccgcgaggtccacgccgccgacggcgag
gccgcggcgatcaccgcgctgacccgcgcctaccgggccggagccggctacgcccggatc
acggcggaggcgcgcgacctgttccgccgcccgctgctcgggccggaactcgacgcgctc
gatgcggtggtgttcgacccgccgcgcgccggggccgaggcgcaggtgcgccggatcgcg
gaatcgaaggtgcccctcgtcgtcggcgtcgcctgcgatcccggcaccttcgcccgcgac
gccgcgaccctgatcgccggcggctaccggctggagcgggtcacgcccgtcgatcaattc
gcgtggtcggcccatgtcgagctggtcggcgtgttccgcaagcaggcgaaggtcaccggc
cgaacgctgcgtcgcccgcgctga
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