Methylorubrum extorquens DM4: METDI5358
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Entry
METDI5358 CDS
T00947
Name
(GenBank) putative metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METDI5358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdi03019
]
METDI5358
Messenger RNA biogenesis [BR:
mdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
METDI5358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
RMMBL
Lactamase_B_3
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
CAX26970
UniProt:
C7CLX1
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All DBs
Position
5291030..5292280
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AA seq
416 aa
AA seq
DB search
MRVRIHRGTREIGGTCVELEHDGARLLLDLGLPLDGAPDDTSHHLAINGLTGGGDLLALV
LSHGHRDHVGLSHLAGPDLPVAMGAATLRILWAAAAFVPDSYVPTNTVTFTDGQALRFGP
FTVTPILVDHSAYDAYALLVEAGQQRLLYSGDLRAHGRKGALFERLVRDPPRGIDTLLLE
GSSLGRLDDDRTFPTEADIEDRFVGLFADTEGMALVTASAQNIDRVVSLYRACKRAGRTL
VLDLYAAEVLAATGNPRIPQSDWPGVSVFVPRHQRVRIKRTGRFDLIERHRANRIYGEQL
AALAPRAALLFRHSLLPDLDRADCLSGARAIWSQWAGYLGQPRGQALVTDLATRAIPLSH
AHTSGHASIPDLKRLAAAIAPRQLVPVHTFEPERFPALFGSCVTIREDGQWWETAA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgcgcatccaccgcggcacgcgcgagatcggcggcacctgtgtcgagctggag
cacgatggtgcccgcctgctgctcgacctcggcctgccactggacggggcccccgacgac
acgagccaccacctggcgatcaacggactgaccggcggtggtgatctcctcgcgctcgtt
ctcagccacggccaccgcgaccacgtcggactgagccacctcgccgggccggacctaccc
gtggcgatgggcgccgcgaccctgcgtatcctctgggccgccgccgccttcgtcccggac
agctatgtcccgacaaacaccgtcaccttcaccgacgggcaggcgctccgcttcggcccg
ttcaccgtcacgccgatcctcgtcgaccactcggcctacgacgcctacgccctgctggtg
gaggcaggtcagcaacggctgctgtactccggcgacctgcgcgcgcacgggcgcaagggc
gcgctgttcgagcgccttgtgcgcgacccgccgcgcggcatcgacaccctgctgctggag
ggatcgagcctcggccgcctcgacgacgatcgcacctttccaaccgaggcggacattgag
gaccgcttcgtcggtctgtttgccgacaccgaaggcatggcgctggtgacggcttcggcc
cagaacatcgaccgcgtcgtctccctctaccgcgcatgcaagcgcgccggccgcacgctg
gtgctcgacctctacgccgccgaggtgctggccgcgaccggcaacccgcgcatcccgcaa
tccgactggccgggcgtcagtgtcttcgtgccccggcaccagcgcgtgcggatcaagcgc
accggccgcttcgacctgatcgagcggcacagagccaaccgcatctacggcgagcaactc
gcggcactcgcgccccgcgccgccctgctgttccgccactcgctgctgcccgacctcgac
cgagccgactgtctcagcggcgcacgggcaatctggtcgcagtgggcaggctacctcggc
cagccccgaggccaagctctcgttaccgatctggctacgcgcgccattccgctcagccac
gcccacacctcgggccacgccagcatcccggacctcaagcgcctggccgcggcgatcgcg
ccccgacagctcgttccggtccacaccttcgaacccgagcgcttcccggcgctgttcggg
tcatgcgtcacgatcagagaggacggacaatggtgggagacggcggcatga
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