Methylorubrum extorquens DM4: METDI5486
Help
Entry
METDI5486 CDS
T00947
Name
(GenBank) putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METDI5486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdi03019
]
METDI5486
03009 Ribosome biogenesis [BR:
mdi03009
]
METDI5486
Enzymes [BR:
mdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
METDI5486
Messenger RNA biogenesis [BR:
mdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
METDI5486
Ribosome biogenesis [BR:
mdi03009
]
Prokaryotic type
rRNA helicases
METDI5486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAX27094
UniProt:
C7CMU9
LinkDB
All DBs
Position
5438530..5440236
Genome browser
AA seq
568 aa
AA seq
DB search
MPFPSLPSPLARALTERNYAEPTPVQQAVLDAVPERDLLVSAQTGSGKTVAFGLAIAGTL
LGEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALE
AGVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRT
LLFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYV
DAPVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATD
VAARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAI
AKVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAA
AFARLYRSRIPVPEEVSDPAYETSRRPDSRSGVPVGASRVGDDEPAAWFRLNLGRRDRAE
PRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEVRASAADDFAASFARRGPADVRVERMQG
DGPAAAKAPKSPRAQRHRREATKTGRGG
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
ttgccatttccgtctctgccctcccccctggcgcgggcgctcaccgagcgcaactatgcc
gagccgacacccgttcaacaggcggtgctcgatgccgtcccagagcgcgacctgctcgtt
tcggctcagaccggatcgggcaagaccgttgccttcggtctcgccatcgccggtacgctg
ctcggcgaagacgaggcgctgccgccgcccggcgcgccgctggcgctcgtcatcgctccg
acccgtgagctggcactccaggtgcagcgggagctgacctggctctacgcgcagaccggc
gcgcgcatcgtcccttgcgtcggtggcatggatccgcgccgcgaggcccgcgcgctggag
gccggcgtccacatcgtcgtcggcacgccggggcgcctgcgcgaccacatggagcgcggc
cggctcgtcaccgaaggtcttcgcgccgtcatcctcgacgaggccgacgagatgctcgac
atgggctttcgcgaggatctcgaattcatcctggcatcgaccccgaaggaccggcgcacg
ctgctgttctcggcgaccctgccgaaagccatcgtcgcgctcgctgagagctaccagcgc
gacgccctgcgcctcgcggtcgccggcgagacccgcggccatgccgacatcgtctaccgc
gcggtgcgcgtgatgccgcgggaggtcgagcacgccgtcgtcaacattctgcgctacgtc
gatgcgccggtcgcgatcgtgttctgcaacacccgtgacggcgtgcgccatcttcaggcc
tcgctgaccgagcgcggcttctccgccgtggcgctctcgggcgaactcggccagggcgag
cgcaacgccgcgctccaggccctgcgcgacggccgtgcccgcgtctgcgtcgctaccgac
gtcgccgcccgcggcatcgacctgccggggctcgacctcgtcatccacgccgaccttccg
cacgatgccgaggtgatgcagcaccgctccggccgcaccggccgcgccggccgcaagggg
acgagcgtcgtgctcgtgccgccggccaagcggcggcgggccgagcagatgttcgccatc
gccaaggtcagtcccgattggagcggcccgccgaacgcggacgaaatccgcatcctcgac
cgcgagcggatgatgtccgatccgctgctcgccgagcccgagacggaagaggaccgcgag
tgggagcgggaatgggccgaggcgctgatggagcgctgcccgcccgagcgtctcgccgcg
gccttcgcccggctctaccgctcgcgcatccccgtgccggaggaggtgagcgatccggcc
tacgaaacgagccggcgtccggattcccgcagcggtgtgccggtcggcgcgtcgcgggtc
ggtgacgacgagccggcggcgtggttccggctcaatctcggccgccgcgaccgggccgag
ccgcgccgccttctgccgatgctgacccgccgtgggcagatcgggcgcggcgatatcggc
tccatccggatcttcgacaacgagacgaccttcgaggtccgcgccagcgcggcggacgac
ttcgccgcctcttttgcccggcgtgggcccgccgatgtccgcgtcgagcggatgcagggg
gatggaccggccgccgctaaggcaccgaagagcccccgcgcccagcgccatcgccgcgag
gcgaccaaaaccggccggggcggctga
DBGET
integrated database retrieval system
