Methylorubrum extorquens DM4: METDI5839
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Entry
METDI5839 CDS
T00947
Symbol
groL
Name
(GenBank) 60 kDa chaperonin (protein Cpn60, groEL protein)
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METDI5839 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdi03019
]
METDI5839 (groL)
03110 Chaperones and folding catalysts [BR:
mdi03110
]
METDI5839 (groL)
03029 Mitochondrial biogenesis [BR:
mdi03029
]
METDI5839 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mdi04147
]
METDI5839 (groL)
Enzymes [BR:
mdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
METDI5839 (groL)
Messenger RNA biogenesis [BR:
mdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
METDI5839 (groL)
Chaperones and folding catalysts [BR:
mdi03110
]
Heat shock proteins
HSP60 / Chaperonin
METDI5839 (groL)
Mitochondrial biogenesis [BR:
mdi03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
METDI5839 (groL)
Exosome [BR:
mdi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
METDI5839 (groL)
Exosomal proteins of other body fluids (saliva and urine)
METDI5839 (groL)
Exosomal proteins of breast cancer cells
METDI5839 (groL)
Exosomal proteins of colorectal cancer cells
METDI5839 (groL)
Exosomal proteins of bladder cancer cells
METDI5839 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
CAX27438
UniProt:
C7CA76
LinkDB
All DBs
Position
complement(5827525..5829165)
Genome browser
AA seq
546 aa
AA seq
DB search
MAAKDVRFSADARDKMLRGVDILADAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI
ELADRFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGAKYVAAGINPMDLKRGI
DLATAAAVKDITARAKKVASSEEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEA
KTAETELDVVEGMQFDRGYLSPYFVTNAEKMVAELEDPYILIHEKKLSSLQPMLPVLEAV
VQTGKPLVIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTKGQT
ISEDLGIKLENVALPMLGRAKRVRIEKETTTIIDGLGEKADIEARVGQIKAQIEETTSDY
DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALNATRAAVEEGIVPGGGVALL
LAKKAVAELKSDIPDVQAGIKIVLKALEAPIRQIASNAGVEGSIVVGKITDNGGETFGFN
AQTEEYVDMIQAGIVDPAKVVRTALQDAASVAGLLVTTEAMVADAPKKDSGAPAMPGGGG
MGGMDF
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaaagacgtacgtttctccgccgatgctcgcgacaagatgctgcgcggcgtc
gacatcctcgcggatgccgtcaaggtgacgctcggcccgaagggccgcaacgtcgtgatc
gagaagagcttcggcgccccgcgcatcaccaaggacggcgtcaccgtcgccaaggagatc
gagctcgccgaccgcttcgagaacatgggcgcacagatggtgcgcgaagtggcctcgaag
accaacgacatcgccggtgacggcaccaccaccgcgaccgtgctggcccaggcgatcgtc
cgcgaaggcgccaagtacgtcgccgccggcatcaacccgatggacctgaagcgcggcatc
gacctcgccacggccgccgcggtgaaggacatcaccgcccgcgccaagaaggtcgcctcc
tccgaagaggtcgcccaggtcggcacgatctccgccaatggcgacaaggagatcggcgag
atgatcgcccacgccatgcagaaggtgggcaacgagggcgtcatcaccgtcgaggaggcc
aagaccgccgagaccgagctcgacgtcgtcgagggcatgcagttcgaccgcggctacctc
tcgccgtacttcgtgaccaacgccgagaagatggtcgccgagctcgaggatccctacatc
ctcatccacgagaagaagctctcctcgctgcagccgatgctgccggtgctcgaggccgtg
gtgcagaccggcaagccgctcgtcatcatcgccgaggacatcgagggtgaggcgctcgcc
acgctcgtcgtgaacaagctgcgcggcggcctcaaggtcgcggccgtgaaggctcccggc
ttcggtgatcgccgcaaggcgatgctcgaggacatcgcgatcctcaccaagggccagacc
atctccgaggatctcggcatcaagctcgagaacgtcgccctgccgatgctcggccgcgcc
aagcgcgtccgcatcgagaaggagaccaccacgatcatcgacggtctcggcgagaaggcc
gacatcgaggctcgcgtcggtcagatcaaggcgcagatcgaggagaccacctcggactac
gatcgtgagaagctccaggagcgtctggccaagctcgcgggcggcgtcgcggtgatccgc
gtcggcggcgcgaccgaggtcgaggtcaaggagaagaaggatcgcgtggacgacgcgctc
aacgccacccgcgctgcggtggaagagggcatcgtccccggcggcggcgtcgcgctgctc
ctggccaagaaggcggtcgccgaactgaagtccgacatcccggacgtccaggccggcatc
aagatcgtcctcaaggcgctcgaagccccgatccgtcagatcgccagcaacgcgggcgtc
gagggctccatcgtcgtcggcaagatcaccgacaacggcggcgagaccttcggcttcaac
gcccagaccgaagagtatgtcgacatgatccaagccggcatcgtcgacccggccaaggtc
gtgcgcaccgcccttcaggacgcggcctcggtcgccggcctgctggtgaccacggaagcc
atggtcgccgacgcgccgaagaaggacagcggcgccccggcgatgccgggcggcggcggc
atgggcggcatggacttctaa
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