Mucilaginibacter daejeonensis: LLH06_00890
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Entry
LLH06_00890 CDS
T07909
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mdj
Mucilaginibacter daejeonensis
Pathway
mdj03410
Base excision repair
mdj03430
Mismatch repair
mdj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LLH06_00890 (recJ)
03430 Mismatch repair
LLH06_00890 (recJ)
03440 Homologous recombination
LLH06_00890 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdj03400
]
LLH06_00890 (recJ)
DNA repair and recombination proteins [BR:
mdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LLH06_00890 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LLH06_00890 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LLH06_00890 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
UEG53532
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All DBs
Position
complement(192689..194386)
Genome browser
AA seq
565 aa
AA seq
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MQKRWAVKHEQDINAVRELATRLGIDEVLATLLLQRNILSFDEARHYFRPDLRHLHDPFL
MADMEQAIHRIDEAIAKGQKILIYGDYDVDGTTAVTVVYSFFEQLYDRLEYYIPDRYLEG
YGISTQGIDHAAANGFELIIALDCGIKAVDKVAYANSLNIDLIICDHHNPGDELPDAVAI
LDPKRADCPYPYKELSGCGIGFKLIQAYAQVHDMPFESVTRYLDLVATSIACDIVHITGE
NRILASHGLQKINTDPGTGLKVLMGLSGKTTNYSIADIVFMIGPRINAAGRIDDAKHAVE
LLLANDPDMAQEKGLLISEKNVERKEHDLAITDEALSMIAADERSAGRRSTVVFSEKWHK
GVIGIVASRLTEKYYRPTIVLTRSNGHVAGSARSVVGFDLYEALCGCSDLLIQFGGHKYA
AGLTMHPEQVEAFAERFEEVVSASITEQQLVQEIQIDAELALEHITPKFFRVLTQFGPFG
PENMCPVFITRQVKALGQVSLVGSNHIKMTVYQDGSPLFDCIAFNQGECIEEIRKGKPFD
ICYTIEENIWRDKRSIQLNIKGIRC
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacggtgggcagtaaagcatgagcaggacattaatgccgtaagggagctggcc
acgcgtttagggatagacgaagtgctggccactttattgctgcaacgcaatatcctgagc
tttgatgaggcgcgccattatttcaggcccgacctgcgccacctgcacgatccattttta
atggcggacatggagcaggccattcaccgcattgatgaggccatagccaaagggcaaaag
atcctgatctacggcgactatgatgtggacggcaccactgccgtcaccgtggtttacagc
ttttttgagcagctgtatgataggctggagtattacatccctgaccgttacctggaaggt
tatggtatatccacccaaggcatcgaccacgcggccgccaacggttttgaactcatcatc
gcactcgattgcgggatcaaggccgtagacaaggtggcctatgccaacagcctcaacatc
gatctcattatttgcgatcaccataaccccggcgacgagctacctgatgccgtggccata
ttggaccccaaaagggccgattgcccttacccttacaaggaactatcgggctgcggtata
ggctttaagctcatacaggcctatgcccaagtgcatgatatgccttttgaaagcgtgacc
cgttaccttgacctggtggccaccagcatagcctgcgacattgttcacattaccggcgag
aaccgcatactggccagtcacggcctacaaaagatcaataccgacccgggtaccggcctc
aaggtattgatgggcctatcaggcaagaccaccaattacagcattgccgatatcgttttc
atgatcggtccgcgcattaacgccgccggccgtatagatgatgctaaacacgctgtagaa
ttattgctggccaatgacccggacatggcgcaggaaaaaggcttgctgatcagtgaaaag
aacgttgaacgcaaagaacacgacctggccattactgacgaggccctaagcatgatcgct
gccgacgagcgatcggctggccggcgatctaccgtggtcttcagcgaaaaatggcacaag
ggcgtgatcggcatcgtggcctcacgccttaccgaaaaatattaccgccccaccatcgta
cttacgcgatccaacggtcatgtggccggatcggcaagatcggtagtgggttttgacctt
tacgaggcactttgcggctgcagcgacctgctcatccagttcggtggccacaaatacgct
gcaggcctcaccatgcaccccgagcaggtagaggcctttgccgagcgttttgaggaagtg
gtaagcgcttctatcaccgagcagcaactggtgcaggagatccagatcgacgctgaattg
gcgctggagcacattacccctaagttcttccgggtgcttacccaattcggtccgttcggg
cccgagaatatgtgcccggtgttcatcacaaggcaagtgaaggctttggggcaggtaagc
ctggtgggcagcaaccacatcaaaatgacggtgtatcaggatggctctccgctgttcgac
tgtatcgcctttaaccagggcgaatgcattgaagagatcaggaaaggcaaaccgttcgac
atctgctacaccattgaagaaaacatttggcgcgacaagcgttctatacaattaaacata
aaagggatacgttgttga
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