Mucilaginibacter daejeonensis: LLH06_02885
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Entry
LLH06_02885 CDS
T07909
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mdj
Mucilaginibacter daejeonensis
Pathway
mdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLH06_02885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdj03019
]
LLH06_02885
03009 Ribosome biogenesis [BR:
mdj03009
]
LLH06_02885
Enzymes [BR:
mdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LLH06_02885
Messenger RNA biogenesis [BR:
mdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LLH06_02885
Ribosome biogenesis [BR:
mdj03009
]
Prokaryotic type
rRNA helicases
LLH06_02885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEG53919
LinkDB
All DBs
Position
complement(632786..634597)
Genome browser
AA seq
603 aa
AA seq
DB search
MNNPFIELGIRHDIVNAITELGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGL
PLLELLDFEENYPQALVLCPTRELCLQITNDLKNYSKNLKNANVVAVYGGASISDQLRQI
KRGVQIVVATPGRMLDILDRKAIDFSQVQYVVLDEADEMLNMGFQEDIDSILSNTPEDKK
TWLFSATMPAEVRRISKKYMTDPYELTMGTKNTGNANIEHEYYIVRARDKYAAFKRIVDF
NPEIFGIVFCRTKIETQEIAESLVKDGYNADALHGDLSQQQRDKVMKRYRERSLQLLIAT
DVAARGIDVNDVTHVINYSLPDEIENYTHRSGRTARAGKSGVSISIVNSKEIGKIRQIER
VIGKKFIKGEIPTGFDVCEKQLFGLIHKVHNVEVNEQQIEQYLPRIMDEFADLSKEDVIK
RFASIEFNSFLEYYKNAPDLNVPEDTRASRDGGEKFPRTGNRSDFTRLFINLGSVDGFSR
GDILGYFCNQTGISGRTIGKIDVKGVYSFIEVANGDVDTAFNAFKSVENHGRQVRIEISA
DGDRVSNRGEGRGSFAGGSNYRSGRREGGGGFRGNSDRNNNGGGFRDFSGKRREDRGERR
KKY
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaataacccatttattgaactggggatccgtcatgatattgttaatgccattactgag
ttaggatttgaaaatcctacaccgatccaggaacagtcgatcccggtattgttaacaggc
agcaacgattttgtcggattagcccaaaccgggaccggaaaaactgctgcttttggctta
ccattattggaactgctggattttgaagagaactatccacaggcactcgttctgtgccct
acacgtgaactttgtttacagatcaccaatgatctgaagaattactctaagaacctgaag
aacgccaacgttgtggccgtttatggtggcgcgagcatctcagatcagttacgccagatc
aaacgcggcgtgcagatcgttgttgctactccgggccgtatgctcgatatccttgaccgc
aaggctatcgatttctcgcaggtgcaatatgtagtattggatgaggctgatgaaatgctc
aacatgggctttcaggaagacattgacagtatcttatctaacacgccagaggataaaaag
acctggcttttctcggctaccatgccggccgaagtacgccgtatctctaaaaagtacatg
accgacccttacgagttgaccatgggcactaagaataccggcaatgctaatattgagcac
gagtactacatcgtacgtgcccgtgacaagtacgctgcatttaaacgcatcgttgatttt
aaccccgagatattcggtatcgtattttgccgtaccaagatcgagacccaggagatagct
gagtcgctggttaaggatgggtacaatgctgatgccctgcacggcgacctttcgcaacaa
caacgcgataaggtaatgaaacgttaccgtgagcgcagcctgcaattgctgatcgctact
gacgttgccgcccgcggtatcgacgttaacgatgttacccacgtgatcaactactcgtta
cctgacgagatcgagaactacactcaccgtagcggccgtaccgcacgtgccggtaaaagt
ggtgtatctatctctatcgttaactcgaaagagatcggtaagatccgccagatcgagcgt
gttatcggtaagaaattcatcaaaggtgagatacctaccggttttgatgtttgtgagaaa
caattgttcggactgatacataaggtacacaatgttgaagtgaatgagcagcagatcgag
cagtacttgccgcgcattatggacgaatttgctgacctgagcaaggaagatgtgatcaaa
cgtttcgcatcgatcgagttcaacagctttttggagtattacaaaaatgcaccagacctt
aacgtacctgaagatacccgcgcaagccgtgatggtggcgagaaattccctcgtaccggc
aaccgttctgacttcacccgtttgttcatcaacctgggttcggtagatggctttagccgt
ggcgacatcttgggttatttctgtaaccaaacaggtatttcaggtcgtaccataggtaag
atcgatgttaagggtgtttactcgttcatcgaggtggccaatggcgatgttgatactgct
ttcaacgcattcaaatcagttgagaaccatggccgccaggtacgcatagaaatatctgct
gatggtgaccgtgtaagcaaccgtggcgaaggccgtggcagctttgcaggcggaagcaac
tacagaagcggccgccgcgaaggcggtggtggtttccgtggcaacagtgaccgtaataat
aatggcggtggtttccgcgatttctcaggcaaacgccgtgaggaccgtggcgaacgtcgc
aaaaaatattaa
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