Mucilaginibacter daejeonensis: LLH06_04840
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Entry
LLH06_04840 CDS
T07909
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mdj
Mucilaginibacter daejeonensis
Pathway
mdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLH06_04840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdj03019
]
LLH06_04840
Enzymes [BR:
mdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LLH06_04840
Messenger RNA biogenesis [BR:
mdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LLH06_04840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
CMS1
AAA_22
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEG54293
LinkDB
All DBs
Position
1100564..1101862
Genome browser
AA seq
432 aa
AA seq
DB search
MLFSELNLIGPILKALETEGYTQPTPIQQQAIPIVLQRKDLLGCAQTGTGKTAAFSIPLL
QILYQERSQHKEQKTIKALILTPTRELAIQIDESLEAYGRNTGLKHMVIFGGVSQNPQVD
ALRRGIDILVATPGRLLDLMNQGYIKLDHIKFLVLDEADRMLDMGFVHDVKRIIAKVPVK
RQTLFFSATMPKEIQQLADTILNKPEKVEVTPVSSTADTIQQEVYFVDKNDKKALLAHIL
QDKTIETVLVFTRTKHGADKVVKDLSRAGITAEAIHGNKSQNARQRALSNFKDRTTRVLV
ATDIAARGIDVDDLTHVINFELPNIPETYVHRIGRTGRAGASGIAYSFCDQEEKEYLKDI
HKLIAKTIPVNEAHPYPMKQLTDVERLREELKGKPAGQQQGNRSGGGHRNGKRRSGNGNS
RGGNRGRATAKS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgttattttcagaattaaatttgatcgggcctatccttaaagcgcttgaaactgaagga
tatactcagcccacccctatacaacagcaggccattcccatcgtgctgcaacgcaaagac
cttttaggttgcgcgcaaaccggtaccggtaaaacggccgccttctcgatccccttgttg
cagatcctttaccaggagcgtagccagcataaagagcaaaagaccatcaaggcgttgatc
cttacacctacccgcgagctggccatccagatcgacgagagcctggaagcctacggccgt
aacaccggcctgaagcatatggtgatctttggcggtgtatcacaaaacccacaggtcgac
gccctgagacgcggcatcgacattctggtagccactccaggtcgtttgctcgacctgatg
aaccagggctacatcaagcttgatcatatcaagttcctggtgttggacgaggccgaccgc
atgctggacatgggttttgtgcacgatgtgaaacgcattattgccaaggtgccggtgaaa
cgccaaacgttattcttttcggccaccatgcctaaagagatccagcaactggccgatacc
attttgaacaagcccgaaaaggtagaggtaacgccggtgtcatcaaccgccgacactatc
cagcaagaagtatattttgttgacaaaaacgacaaaaaagcacttttagcacacattctt
caagataagaccatcgaaacggtactggtattcacccgtaccaagcatggtgccgataaa
gtggtaaaagatctgagccgcgccggtatcaccgccgaagccatccacggtaacaaatcc
cagaacgcccgccagcgtgcgctaagcaactttaaggaccgcaccacccgcgtattggta
gccaccgacatcgctgcccgcggtatcgacgtggatgatctgacccacgtgatcaacttc
gaattgcctaacatccctgaaacgtatgtacaccgcattggccgtaccggcagggcagga
gcaagcggtatagcttactcgttctgcgatcaagaggaaaaggaatacctgaaagatatc
cataagctgatagccaagaccatcccggtgaacgaggctcatccttacccgatgaaacag
ttgaccgatgtagagcgtttacgtgaagaattgaaaggcaaacctgccggtcagcaacaa
ggcaaccgttcgggcggtgggcatcgcaacggcaaacgccgcagtggtaacggcaacagc
cgtggcggtaaccgtggcagggctacggcaaaaagttaa
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