Mucilaginibacter daejeonensis: LLH06_11525
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Entry
LLH06_11525 CDS
T07909
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mdj
Mucilaginibacter daejeonensis
Pathway
mdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLH06_11525 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdj03019
]
LLH06_11525 (recQ)
03400 DNA repair and recombination proteins [BR:
mdj03400
]
LLH06_11525 (recQ)
Enzymes [BR:
mdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LLH06_11525 (recQ)
Messenger RNA biogenesis [BR:
mdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LLH06_11525 (recQ)
DNA repair and recombination proteins [BR:
mdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LLH06_11525 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
RecQ_Zn_bind
HRDC
ResIII
DUF1048
HTH_40
PIN_12
Motif
Other DBs
NCBI-ProteinID:
UEG55364
LinkDB
All DBs
Position
complement(2714111..2716303)
Genome browser
AA seq
730 aa
AA seq
DB search
METKKSLFDNLQNFFGFDNFKGEQEAIITNIMAGNDTFVIMPTGGGKSMCYQLPALMTEG
TAIVISPLIALMKNQVDQLRAFCNSDSVAHFLNSSLTKTETAKVKEDVLAGKTKLLYVAP
ESLTKQDNIDFLRLNKLSFVAVDEAHCISEWGHDFRPEYRKIRQVIANLGENIPIIALTA
TATPKVQHDIQKNLQMNNATVYKSSFNRSNLFYEVRAKRNVLKEIVKFIKQHQGKSGIVY
CLSRKKVEEVAEALNLNGVKALPYHAGLDAKVRAETQDKFLMEDVEVIVATIAFGMGIDK
PDVRYVIHHDVPKSMEGYYQETGRAGRDGGEGICVAFYSEKDVDKLQKFMKDKPVSEREI
GTQILKEVIDYAESAVCRRKQILHYFGEDFDASKCSGMCDNCSSERSTFDAEAQLHRALS
LIKQLGEKFDDHHITDVLMGDDSPNVHHYEHHLLDVFGSGKEEGKNLWNSLLRQALLDNF
LSKDIDNYGLLKLTDKGHNFLDNPFSLRFVLNKPMEAADDDDHDDGPKTGTGALDTQLLQ
MLKDLRKKIAKQKNLPPFVIFQDPSLEEMCTHYPINTDELKQISGVGAGKAAKFGGPFTE
LIKKYVEDNDIDRPVDMVIKSAANRSALKVYIIQNIDRHLDLEDIASSKGLSYEEILREV
ESIVNSGTKLNLNYYIDEVIDEDKQEEVYDYFRTAEVDSIDDALVDLGVNDYTREEIQLM
RIKFMSELGN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atcgagacaaaaaaatcgctctttgataacctgcagaacttttttggatttgataacttc
aaaggtgagcaggaagcgatcataactaacatcatggccggtaatgacacctttgtgatc
atgcccaccggcggtggaaaatcaatgtgttatcagttgcccgctttaatgaccgagggc
accgccatcgtgatatcaccgctgatcgcgctgatgaaaaatcaggtggatcagctaagg
gccttctgtaattctgatagtgtggcccacttccttaattcatcacttaccaagaccgag
accgctaaagtaaaagaggatgtacttgcgggcaagaccaaacttctatacgtagctccc
gaatcgcttaccaagcaagataatatcgattttttgcgtttgaacaaactgtcgttcgtg
gcggtggatgaggcgcattgtatatcggagtgggggcatgatttccgccccgagtaccgt
aagatacgccaggtgatcgctaaccttggcgagaacatacctatcatcgccctcacggca
acggccacgcctaaggttcagcacgatatacagaagaacctgcaaatgaacaacgctacg
gtgtacaaatcatcgttcaaccgttctaacctgttctatgaagtacgtgccaaacgcaat
gtgcttaaagagatcgttaaatttattaaacaacatcagggtaagtcaggcatcgtttac
tgcctgagccgtaaaaaggtagaagaagtggccgaggcccttaacctgaacggtgttaaa
gctttgccttaccatgctggtcttgatgccaaagtgcgtgccgaaacgcaggacaagttc
ctgatggaagatgtagaagtgatcgttgctaccattgccttcggtatgggcatcgataaa
cctgatgtgcgctacgtgatccaccatgatgtgcctaagagcatggaaggctactaccaa
gagaccggtcgtgcgggccgcgatggtggcgagggcatctgtgtggccttctactccgaa
aaggatgtagataagctgcaaaaattcatgaaggacaagcctgtttcggaacgtgagata
ggtacgcagatattgaaggaagtgatcgattatgctgagtcggccgtgtgccgccgtaag
cagatcctgcactactttggtgaggactttgacgcgtcaaaatgcagcggcatgtgcgat
aactgtagcagcgagcgcagtacatttgatgctgaagctcaattacatcgtgcactgagc
ctgatcaaacaactgggcgaaaagttcgacgaccatcatatcactgatgtgctgatggga
gacgatagccctaacgtgcatcactatgagcatcatttgcttgatgtgttcggctcgggt
aaagaagaaggtaagaacctttggaactcattgttacgtcaggcgctgctggataatttc
ctttccaaagacattgataactatggcttgctgaagctgaccgataagggccacaacttt
ttggacaatcctttcagcctgcgttttgtgctcaacaaaccaatggaggcagccgacgat
gacgaccacgatgacggaccaaagaccggcaccggcgctttggatacgcaattgcttcaa
atgctgaaagatctgcggaagaagatcgccaagcaaaagaatttgccgccgttcgtcatc
ttccaagacccatcgttagaggagatgtgcacgcattacccgatcaacaccgatgagttg
aaacagatatcgggtgtgggtgcaggtaaggccgcaaaatttggcggcccgttcacagag
ctgatcaaaaaatatgttgaggataatgatatcgaccgtccggtggatatggtgatcaag
agtgctgccaaccgctctgcactgaaggtttacatcattcagaacatcgaccgtcattta
gacctcgaagatatcgcatcatcaaaagggttgagttatgaggagatcctgcgtgaggtg
gaatctatcgttaactcgggaactaagttaaacctcaactactacattgatgaggtgatc
gatgaggacaagcaggaagaggtgtacgactacttccgcaccgcagaggtagattcgata
gatgatgcactagttgatctgggcgttaacgattacacccgcgaagagatacaattgatg
cgcatcaaattcatgtcggaactgggcaactaa
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