Mucilaginibacter daejeonensis: LLH06_18925
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Entry
LLH06_18925 CDS
T07909
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mdj
Mucilaginibacter daejeonensis
Pathway
mdj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LLH06_18925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdj03400
]
LLH06_18925 (mfd)
Enzymes [BR:
mdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LLH06_18925 (mfd)
DNA repair and recombination proteins [BR:
mdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LLH06_18925 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UEG53023
LinkDB
All DBs
Position
complement(4393596..4396949)
Genome browser
AA seq
1117 aa
AA seq
DB search
MNIRDILERYKTDNRVTQLAQALNSSRNPRIQLRGLVGSSDATIAVALYFLQHKHQLFVL
PDREEASYFQADLENLTGKEVLLFPSSYRKAFEFTQPDASNVLARAEVLNELNHSTEYGQ
IIVSYPEALAEKVIDRSSLEKNTLEISVDNKLSIDFINEFLIEYDFERVDFVYEPGQFSI
RGGIVDIFSFSHDLPYRVEFFGDHIESIRTFEIESQLSAERVKAITIVPNVQSKFLTENN
ISLLEYVERDTQVWIRDVQFTFDIIRDGFKKATQLWKALSAEEKNQNPDWIDPKFAFTDE
KLIADQLHDFAVIEFGKQFFYNADHTLNFDIRPQPSFNKDFQLLIHNIKNNDIEHIENLI
FTDSTKQVERLYAIFDDLDKTVKFTPIHVSVREGFIDREQKLACYTDHQIFDRYYKYKLR
KGYQRSQAITLKELRDLKPGDYVTHIDHGIGKYAGLEKVEVNGKMQEMIRLIYADNDLLY
VNINSLNRISKFSGKEGSVPKMNKLGTDTWERLKKTTKKKVKDIARDLIKLYAIRKTKQG
NAFSPDSYLQTELEASFIYEDTPDQEKATNDLKKDMESPHPMDRLICGDVGFGKTEVAIR
AAFKAVADSKQVAVLVPTTILAAQHYKTFSDRLKGFPANIDFINRFKTNKQIKDSLAKLA
EGKLDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVATKEKLKAMRANVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVVTELHVFNDTLIKEAVEYEIDRGGQIFFIHNRVA
DLPQLGGLIRKLVPKARIGIAHGQLEGDDLEDVMLKFVNHEYDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSELG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKDEEFKEVFKDEKP
RPFITFTQIDTDMEILIPDEYVTNLTERYNLYTEISKLENETELMAFEKQLADRFGPVPL
QVKDLFNTIRLQWLGKAIGFEKISLKKNVLRGYFLTNQQSQYFESVAFMQVLQFVKNNPR
KVNMKEVKNTLRISVEGVMSIDEAVDLLSEIGVGVPA
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgaacattcgtgatatattagaaaggtacaagaccgacaacagggtcactcaactggct
caggcactcaacagctcgcgtaatcctcgtatacaactgcgcggattggtaggctcgagc
gatgccaccattgccgttgcgttgtactttttacagcataaacatcagctattcgtactg
cccgacagggaggaggcaagctactttcaggccgatctggagaacttgaccggtaaagaa
gtattgctgttcccatcctcgtaccgcaaagcttttgagttcacgcagcctgatgccagc
aatgtactggcccgagccgaggtgttgaacgaactgaaccactccaccgagtatggacag
atcattgtgagttaccctgaggccctggccgaaaaggtgatcgaccgttcatcgctggag
aagaacacgcttgagataagtgttgacaataaattaagcatcgatttcatcaacgagttc
ctgatcgagtatgattttgaacgtgttgattttgtttatgagccgggccaattctcgatc
agaggcggtatcgtggatatcttctccttttcgcatgatctgccttaccgcgtggagttc
tttggcgatcacatcgaatccatccgtacttttgagatagaaagccaattatctgcagaa
agggtcaaggcgatcaccatcgtgcctaacgttcaatcaaagttcctgaccgagaacaat
atctcgctgttggaatatgtagagcgtgacacccaggtttggatacgtgatgtgcagttc
actttcgacatcatccgcgatggctttaaaaaggccacccaattatggaaagccctatcg
gctgaggaaaagaaccagaacccggattggatagacccgaaattcgcttttactgatgaa
aaactgatcgctgatcagctgcatgattttgccgtgatcgagttcggtaagcagttcttc
tacaacgccgatcatacgctcaatttcgatatccgtccacagccatcgttcaataaggat
tttcagctgctcatccacaatatcaagaacaatgatatagagcacatcgagaacctgatc
tttaccgatagtaccaaacaggtagagcgcctgtacgccatattcgacgatctggacaag
accgtaaagttcacacccatccacgtgagcgtgcgggaaggctttattgatcgtgaacag
aaactggcctgctataccgaccaccaaatatttgaccgctattataaatacaaactgcgc
aaaggctatcagcgctcgcaagcgatcaccctgaaagaactgcgtgaccttaaaccgggc
gattatgtgacgcacatcgatcacggcataggcaagtatgccggcctcgaaaaagtggag
gtgaacggcaagatgcaggaaatgatcaggctgatctacgccgataatgacctgctttat
gtcaacatcaactcgcttaaccgcatctctaagttcagcggtaaggagggttcggttcct
aaaatgaacaagttgggtaccgacacctgggagcggctgaagaagaccacaaaaaaaaaa
gttaaagacatagcgcgcgacctgatcaagttgtacgccatacgcaagaccaagcaaggt
aacgcgttctcgcccgatagctatttgcagaccgagttggaagctagctttatttacgag
gataccccagatcaggaaaaagcgaccaacgacctcaagaaggacatggaatcgccgcac
ccgatggaccgccttatttgtggcgacgtgggatttggtaaaacggaggtggccataagg
gcggccttcaaggccgtggctgatagtaaacaagttgccgtattggtgcctaccactatt
ttagcagcgcaacattacaagacctttagcgataggctcaaaggtttcccggccaacatc
gattttattaaccgctttaagaccaacaaacagatcaaggactcattggccaaactggct
gagggtaaactggacatcatcattggtacgcaccgtttggtgagcaaggatgtgaagttc
aaagacctggggttaatgatcattgatgaggagcagaaatttggtgtggccaccaaagag
aaacttaaggccatgcgtgccaatgtagatacgctgacgcttaccgcaacgcctataccg
cgtaccctgcacttttcgctcatgggcgcgcgtgacctttccatcatatccacaccaccg
cctaaccggcaaccggtggtgaccgagttacacgtttttaatgacacgctgatcaaagaa
gctgtggaatatgagatcgatcgcggtgggcagatattcttcatccataaccgcgtggcc
gatctgccgcaattgggtggattgatccgcaaactggtacctaaggctcgtataggcata
gctcacgggcagttagagggtgatgacctggaggatgtgatgctcaaatttgtgaaccat
gagtacgatgtgctggtggccaccaccattattgaggccggtttggatatccctaatgcc
aataccatcatcattaaccatgcccacatgttcggccttagcgatctgcaccagatgcgt
ggccgcgtggggcgtagcaataaaaaggcgttctgctacttgttgagtccgccgctatcg
accttgacctctgaggcgcgcaagcgtttgagcgctatagaggagtttagcgagttgggt
agcggtttcaacgtggccatgcgcgacctcgatatacgtggtagcggtaatctgctgggt
gccgagcaaagcggctttattgccgagataggttttgagatgtatcacaagatactggac
gaggccattcaggagctgaaggacgaagagttcaaggaggtgttcaaggatgaaaagccg
cggccgttcatcacctttacccagatcgataccgatatggagatcctgatccccgatgag
tatgtgaccaacctgaccgagcgttataacctgtacaccgagatatcaaagctggagaac
gagaccgagctgatggcctttgaaaaacaactggccgatcgctttgggccggtgcctctg
caggtgaaggacctgttcaacaccatccgcctgcaatggttaggcaaggccattggcttc
gaaaagatatcgcttaagaagaacgtgctgcgtggctactttttaactaaccagcaatct
cagtattttgagtcggtagcctttatgcaggtgctgcaatttgtgaagaacaacccgcgt
aaggtgaacatgaaagaggtcaagaacaccctccgcattagtgtggaaggtgtgatgagc
atcgatgaagcagttgacctgttgagcgagatcggcgtaggggtgcctgcatag
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