Microplitis demolitor: 103577127
Help
Entry
103577127 CDS
T05600
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mdl
Microplitis demolitor
Pathway
mdl03013
Nucleocytoplasmic transport
mdl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103577127
03015 mRNA surveillance pathway
103577127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdl03019
]
103577127
Enzymes [BR:
mdl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103577127
5.6.2.5 RNA 5'-3' helicase
103577127
Messenger RNA biogenesis [BR:
mdl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103577127
mRNA cycle factors
Common to processing body (P body) and stress granule
103577127
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
NPHP3_N
ATPase
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA_32
AAA
AAA_5
Motif
Other DBs
NCBI-GeneID:
103577127
NCBI-ProteinID:
XP_008555868
LinkDB
All DBs
Position
Unknown
AA seq
1128 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDSAQSQPNQ
SVQINGTNGSSALDLKISGAAQNLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIEDRSFLSWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSADEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPVPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESMIQFAKP
KKLINSANPGSHFMSTSMYDAREALIPGSVYDRSGGGQMNGAAQSHNPYYQRNIPLDMFS
RTHDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQQRNRRTGI
KKMGVGSSVGPRMGKFSQSDINTQPYSSQGAAAGLPLTQGTTQGMSQPGFSLSQPGLSQA
ELSQDSFAVGDFQSQMDGLLSQDSTYQGDRSGFYQGQSQPSGQFSQPY
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtatggacccagcagccaaactcttacatttttggacaccgaagag
gcggatttgattggagctgacactcaaggaagtgaatttgacttcactgatttcacgtta
ccgtcgccgagtcagacccaagcttcccaacatgactctgcccagagccaaccgaaccaa
tcggtccagatcaatggaacgaatggaagctcagcattggatttaaaaatatccggtgca
gctcagaacctcgcagagttacaatttgaagaggaggaagaggaagcttattacaaccgc
gatttaccagagcacgcgtgtaaatattgtggcatacatgaagcatcgtgtgttgttatg
tgcaatgtctgcagaaagtggttctgtaatggacggggtaacacatctggctcgcatatt
attaatcatcttgtgcgcgccaaacacaaggaagttacattacacagagatgggccattg
ggtgaaacagtactggaatgctactcatgtgccgtgaggaatgtatttgtccttggattc
ataccagccaaagctgactctgttgttgttttgctttgccgacaaccatgtgctgctcaa
aattcgctgaaagatatgaactgggatcaagagcaatggaaaccgttgattgaagaccgt
agttttttatcatggctcgtaaaaattccatctgagcaggagcaattacgtgcacggcaa
atatccgcacagcagataaacaaactcgaggaattatggcgcgataatgtggacgctact
ttccaagacctcgagaagcctggggtagacgaggagcctcagcaggtgctgctgcgctat
gaagacggctaccagtatcagaatattttcggaccgctagtgaaactcgaggcggattac
gacaagcgactcaaagaatcacagacccaagagaacatcgaagtgcgctgggacgtgggg
ctgaacaagaagaccatagcctactttatgttggctaaaaccgacggggacatgaagctg
atgcacggtgacgagctccgactgcgctatctcggtgagctgcacaaaccctggtcaggt
atcgggcacgtcattaaaatacccgacaattatggtgaagaagttgggattgagttgaaa
aataactccggcgcgccgacagaatgcgtaagtaattttgttgttgactttatatggaag
agtaccagcttcgatcgtatgcaattggcgctgcgtaagtttgccgttgacgatacgtca
gtatccgcatatatttaccaccgtctactgggccatgaagtcgaggaagttttgttccgc
tgccacttacccaaacacttcagtgctccaaatttacctgatctgaatcgctcccaagtc
tacgccgtcaaacacgcagtacagcgacccctgtctttgatccaagggcctccaggtacc
gggaaaactgtcaccagtgcaacgattgtctaccaattggtaaaacaaaacggtggtccc
gttctggtatgcgcgccatccaacactgcagtagaccaactgactgaaaaaatccacaag
tcaaatctcaaagtcgtgcgtctctgtgccaagtcccgggaggctatcgattcgcccgtg
agttttctggctctgcataaccaaataaaaaacatggaaaccaacaccgagttacagaaa
ttacagcagcttaaagatgaaactggggaattgtcatcagcagatgaaaaacgttaccgt
ttattaaaaaaagccgctgaaaaagagttacttgaagccgctgatgttatctgctgtacc
tgcgtgggtgcaggtgatccgcggctgcatcgcttgaagttccactcgatactcattgac
gagagtatgcaagccaccgaacccgagtgcatggtaccagtagtcttgggggccaaacag
ctgatattagttggagatcattgtcaactaggtccagtggtgatgtgtaagaaggcagca
cgtgctggtttatcccaatctctattcgaacgtctggtcgtgttgggcatccgtccattc
aggcttgaagttcagtatcgtatgcacccagacttgtctcgtttcccgtcaaatttcttc
tatgaaggctccctgcaaaatggcgtgtgtgccgacgaacgcaaactcctgaaaatagat
ttcccttggcctgtacccgacaagcccatgttcttctacgtgactcagggccaagaagaa
atcgccggaagcggtacatcgtatcttaaccgcacagaagcttctaatgttgaaaaaata
accacgagatttctgcgctgcggcgtgaaacccgagcagatcggcgttatcacaccctac
gaaggacagcgcgcttacttggtacaatacatgcagtaccagggctcattgcactcaaag
ctttaccaagagatagaagtagccagcgttgacgctttccaaggacgtgagaaagacatc
atcataatgtcttgcgtccgctcaaacgagcaccagggcattggttttttgaatgacccg
cgtcgtttgaacgtcgcgttgacccgtgccaagtacggtatcataattgtcggcaacccg
aaagttctgtcaaagcagccgctgtggaaccatctgctgaacttttacaaagagcaaaag
gtcctggtagaagggcccttgaataatttgaaagagtcaatgatccagttcgctaaacca
aagaaattaataaactcagcgaatcccgggtcgcactttatgtcgacctcgatgtacgac
gcgcgcgaagctctgatacctggctccgtttacgacagatctggcggtgggcaaatgaat
ggagctgcacagtcacacaatccttactaccaacgcaacatacccttggatatgttcagc
agaactcacgataccataagttacataagtcccgagcgggcgcaagctgctatgaacaac
gtccccgtgccagtgggaatgttcatgaacatggcccacgtgccaccgcgattttacaac
cagcatcagcaagcactgcaggcaagacagaaccagcagcgcaaccgccgcacggggatc
aaaaaaatgggcgttggtagcagcgtcggaccacgtatgggcaaattcagccaaagcgac
atcaacacccagccctacagcagccaaggagccgctgctggtctgccactcactcaagga
actactcaaggaatgtcgcagcccgggttcagtctttctcagcccggtctgtcgcaggct
gaactgtcccaggactcatttgctgttggagatttccagtcgcagatggacggtctgcta
agtcaagattcgacttatcagggcgacaggagtgggttctaccagggacaatcacaacca
agtggacaattctcacagccgtactga
DBGET
integrated database retrieval system
