Microplitis demolitor: 103578678
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Entry
103578678 CDS
T05600
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mdl
Microplitis demolitor
Pathway
mdl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103578678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdl03019
]
103578678
Enzymes [BR:
mdl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103578678
Messenger RNA biogenesis [BR:
mdl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103578678
mRNA degradation factors
3'-5' decay
Ski complex
103578678
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
ResIII
Helicase_C
DEXQc_Suv3
ATPase_2
MTR4-like_stalk
EGF_alliinase
Reovirus_L2_N
DUF922
Motif
Other DBs
NCBI-GeneID:
103578678
NCBI-ProteinID:
XP_008558050
LinkDB
All DBs
Position
Unknown
AA seq
1212 aa
AA seq
DB search
MSISTEEFLTEVCGPPPILSDIRDELCEYIECPEKLPIHQVENVQLYWPREPDILSLLEY
DLSPVGTVLKYDRDPITGRITHMREDVLQGAGENAKNSMSMSRAPGPPMEGVQGNSSNFP
FWPGGFDEPEVLKTVSVSDLDLENNLRTLAKGFQAGVEFSSDNFTPKDAVKNDFKNQHKK
KPKLKLEKVNLMAIVNEEGNKLGLWSSSSSSETEQVKKFDDTVANLEDIDDLVIDDSHIP
VLKLVEKPKSMQAEWAEQLDVSIPVPDFDKRVPKPAITFDYELDTFQKQAIIKLEEGCNV
FVAAHTSAGKTTVAEYAIALSQRHMTRVIYTSPIKALSNQKYRDFKRNKHFESIGLVTGD
MQINQTANCLIMTTEILQTMLYNASEVLRDLEYVIFDEVHYINDENRGHVWEEIVILLPP
NVNIVMLSATVPNPLIFANWVGNIKKRKMFVISTLKRPVPLKHYLYIGTDGKTRNDRFLV
LDGEGQFNLDTWYKVKQLKDSKKKNNRDPKKDNRRIQMTPKQEKTMWEAFIAHLKEHEKL
PVVIFTLSRNRCDMNADSLTSVCLTTETEKGHVRAFFKKCIKRLNDADRELPQIKRMESL
LERGIGVHHSGILPILKEIIELLFQNGVVKLLFATETFAMGINMPARTVVFDSIRKFDGK
QFRGLLPTEYIQMAGRAGRRGHDKSGTVIIMCKTEVPHFMDLRAMMCGEPQNLQSQFKIT
YSMVLNLRRVSESVSVEDMMRRSFKELSLITDITKRKTELNEVEEALAKLPPETEFQKQL
SEFYKLAMEYITEWRTLSPLLFMGKKVSKALLPGKVLIISYRHHYYKLAVLLNVSQKREE
VEYGVLCLKNSNESREKLNKPENWYRILSLTRRTVFVPEGVPSHEYLVIKAENINEITNC
VIGTDCSLVLKDCEKRKISRFQNDPPSPSCQAAIQDLISLSLMTRSSPKVLQPYLEPPVS
HPELVPRSKYLAQLEKNIAQTKVSELPNLEQHFEAVFERNELERRRRELEFQLSDESLAL
YPEYVNRVKVLKRLGYIDTDDRVTLKGRVALDMGTHELLITELVYRNILTNLQPAEIAAL
LSALVFQQKVENDPEPKLSVLKETMKTMIEIRHEIESIELQYGMETVEPLNFGLVEVVYE
WAREESFAKIMELTEVQEGIIVRCIQQLNDTLKDVKTAANRIGETVLKEKMEEASTAIKR
DIVFTASLYTQD
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatcgacagaggaatttttaacagaggtctgtggtccgccaccaattttatcg
gacatcagagacgaactttgtgagtacatcgagtgtccagagaaactaccgattcaccag
gtagagaatgtccagctgtactggccacgtgagccagatattttgtcgcttcttgagtac
gatttgtctccggttggtacagtgctcaagtatgaccgggacccgataactggacgcatt
acgcacatgagggaagatgttctgcagggagctggggaaaatgctaaaaattcaatgtct
atgtcacgagcacctggtccaccgatggaaggagtccaaggtaattcgagtaactttccc
ttctggcctggtggtttcgatgagccggaggtgctgaagacagtctcggtgtcggacctg
gacctagaaaataatttacggactctggcaaaaggtttccaggcgggtgtagaattttcc
agtgacaatttcacccccaaggatgccgtcaaaaatgatttcaaaaaccagcataagaaa
aaaccaaagcttaagttggagaaagtcaatttgatggcgattgtaaatgaggagggaaac
aaattgggcctttggtcgtcgtcgagttcctcagaaacggagcaggttaaaaaattcgac
gatactgttgcgaatcttgaagacatcgacgacttggtgatagacgactcgcatatccca
gtgcttaaactcgttgagaaaccaaaatcgatgcaagccgagtgggctgaacagctggac
gtgtcgatacctgttccagattttgacaaacgtgtgccaaaaccagctatcacttttgat
tacgagctggacacatttcaaaagcaggctattattaaactggaagagggctgcaatgtc
ttcgtcgctgctcacacttccgctggtaaaacaaccgtcgccgagtacgctattgccctc
agtcagagacacatgacacgtgtcatctacacatctccaataaaagccttgtcaaatcaa
aaataccgggactttaaacgtaacaaacactttgagagcatcggtttggtaaccggagac
atgcagatcaaccagacagcaaactgtttaatcatgaccactgaaattttgcagacgatg
ctctacaacgcgtcagaagtcttgcgtgatctcgagtacgtaatctttgacgaagtccat
tacatcaacgacgagaaccgcggtcatgtttgggaagaaattgttattcttttaccccca
aatgtcaatattgttatgctatcagcgactgttccaaatcctctgatattcgccaactgg
gttggtaatatcaagaagcgtaaaatgttcgtaataagtacgttgaaacggccggtaccg
ttgaaacactacttatacattggtactgatggcaagacacgaaacgacaggttcctagtg
ctggatggcgaaggacaattcaacttggacacctggtacaaagtgaagcagctcaaagac
tcgaagaaaaaaaataaccgggaccccaagaaagacaacagacgcatacagatgacgccg
aagcaagagaagacaatgtgggaagctttcatagctcatcttaaagagcatgagaaatta
ccagtcgtcatatttactctgtcgagaaatcggtgtgatatgaacgcagattctctgacg
tcagtctgcctgactacggagactgagaaaggacacgtgagagctttctttaaaaagtgt
atcaagcgtttgaatgacgcagatcgtgaattgccgcaaataaaacggatggaaagtctg
ctggaacggggtattggtgtccaccatagcgggatcctgcctatcttgaaagaaataatc
gagttattgtttcaaaacggtgttgttaaattactgtttgctacagagacatttgcgatg
ggtatcaacatgcccgcgcgtactgtcgtcttcgactcaatacggaaattcgacggcaaa
caattccgcggactactgcccacggaatatattcagatggccggtcgtgctggccgacgt
ggacacgataagtcgggtaccgtaataataatgtgtaagacagaggtaccgcattttatg
gacctgagagcgatgatgtgcggcgagccgcagaacctgcagtcacaatttaaaataact
tactctatggtactgaacttgagacgagtcagtgagtcggtcagtgttgaggacatgatg
cgtaggtcattcaaagagctctcattaattactgacatcactaagcggaagaccgagttg
aatgaagtggaagaagcgctggctaaactcccaccggagactgaattccagaaacagttg
tccgagttctataagctagcgatggagtacatcaccgagtggagaacactcagtccgctt
ttattcatgggaaaaaaagtttcaaaagctttgttgcctggtaaagtactgatcatatca
tacagacatcattattacaagctggctgtgctgctgaatgtaagtcagaaacgggaggag
gtggagtacggggtgctgtgtttaaaaaattcaaatgagtcccgggagaaactcaacaaa
ccagaaaactggtacagaatattatccctgactagaagaactgtctttgtacctgaagga
gtcccgtcacacgagtatttagtaattaaagcagaaaatataaatgaaataacaaactgc
gtgatcggtaccgactgcagtctggtactgaaagactgcgagaaacgcaagatatcgcgg
ttccaaaacgacccacctagtccatcgtgccaggctgctatccaggacctgatatccctg
tccctgatgactcgctcctctccgaaggttctccagccttacctggagccaccggtttcc
cacccagagctcgttcctagatcaaagtacctcgcccagctagagaagaatatcgcccag
acaaaagtgtccgagctgccgaatttggagcagcactttgaagccgtcttcgaacgcaac
gaactcgaacgtcgtcgacgcgagctagagttccaattaagtgacgaaagtctcgctctt
tacccagagtacgtcaacagagtcaaggtattgaagagactggggtacattgacaccgac
gacagagtcactttgaaaggtcgcgtggcattagacatgggtactcatgagttattgatc
acagaattagtttaccgtaatattctaacaaacttgcagccagcagagatagccgccctt
ctgtctgctctagtgttccagcaaaaagtagaaaacgacccagagccaaaactatcagta
ctcaaagaaacaatgaaaacaatgatagagatacgtcatgagatagaatctatagaactg
cagtatggaatggaaacagtagagccacttaacttcggtctagtggaggttgtttatgag
tgggctcgagaagagtcgtttgctaaaataatggagctaacagaggtccaagaagggatt
attgtccgttgcatccagcaattaaacgacacactaaaggatgttaaaacagcagcaaat
agaatcggcgagactgttttgaaagaaaaaatggaggaagcctcaacggctatcaagcgt
gatattgttttcacggcttccctctacactcaggactaa
DBGET
integrated database retrieval system
