Methylomonas denitrificans: JT25_000945
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Entry
JT25_000945 CDS
T04191
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03030
DNA replication
mdn03430
Mismatch repair
mdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JT25_000945
03430 Mismatch repair
JT25_000945
03440 Homologous recombination
JT25_000945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdn03032
]
JT25_000945
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_000945
Enzymes [BR:
mdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JT25_000945
DNA replication proteins [BR:
mdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JT25_000945
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JT25_000945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Bac_A_amyl_C
Motif
Other DBs
NCBI-ProteinID:
AMK75060
UniProt:
A0A140E3T6
LinkDB
All DBs
Position
complement(202410..205898)
Genome browser
AA seq
1162 aa
AA seq
DB search
MTPSFVHLRIHTEFSLVDGIVRIKPLVKKLAEYVMPAAAITEQSNLFSLVKFYKAAQGAG
IKPLIGADVLIFNPDEPASPFRLTMLARNKKGYVTLTELISRGYQEGQHQGIPMLQKEWI
AENHDGLIVLSGAMDGDVGQALLAENAEQAKRCAEYWRDLFPNSFYLELQRVGKADEERY
IKLVADLAAELDLPVVATNDVRFISKNDFDAHEVRVCIHQGRVLDDSRRPKNYSAQQYLR
TAEEMAELFADIPEALANSVEIAKRCNVELTLGENYLPDFPVPEGMTLDDYFKQASRQGL
EERLIQYPPVGKGSFEENRRVYDERLEVELNVITQMGFPGYFMIVADFIQWAKNNAIPVG
PGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDIDFCMERRDEVIDYVA
RHYGRDHVSQIITYGSMAAKAVIRDVGRVMGHAYGFVDRLAKLIPFEIGMTLDKALQDSA
ELKALYDTEEEVKSLIDMARSLEGISRNAGKHAGGVVISPTKLTDFSPLYCEQGGGNLVT
QFDKDDVEAVGLVKFDFLGLRTLTIIDWALQTINHQRAQRGEEPVDISQIPRDDLPSYEL
LKNAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLESGMVDDYINVKHGAK
AEYAHPLLEPILKPTNGVILYQEQVMQIARELASYTLGGADMLRRAMGKKKPEEMAKERE
KFMSGSVANQIDAAIATYVFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKAHFPAAFMAA
VMSSDMDNTDKVVVLIDECREMKLDICPPDINVSDFRFTVNDHGQIVYGIGAIKGVGENA
IEDLLKERAANGPFVGLYDLCKRVDLRKVNRRVLEALIRAGALDTIDPNRAAHLAELTTA
LRVAEQHGKMALAGQNDLFGLAVQVEVSDGEAEAYSTAVEPWTEKEKLEAEKQTLGLFLT
GHPIAEYLPELKHITHGSLASLEVDAGRSRGKMEGRVAGLVVEMRTRQTKQGKMMGFATL
DDRTGRLEVAAFSGIFDKYRNLLAKDTLLVAEGSLAMDDFTNSLRMTAEKLYSMEQAREM
FARAIVLNWDSRHWQGERSFVDELAETLRPFCGGLCPISIEFAKTAAKANLQLGDDWRVY
PSDELLTRLRRLLSFEAVQVRY
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgagtttcgttcatcttcgtattcataccgaattttccttggttgacggtatc
gtcaggatcaagcctttggtgaagaagctggcggagtacgtaatgccggccgccgcaatc
accgaacagagcaatctattctcgctggttaaattctataaagccgcgcaaggcgccggt
atcaaacccttgatcggcgccgatgtgctgattttcaatcccgatgagcctgcctcacca
tttcgcttgaccatgttggcacgcaataaaaaaggctacgtcacgttgaccgagctgatt
tcccggggttaccaggaaggtcagcatcaggggattccgatgttgcagaaggaatggatc
gccgagaatcacgacggcttgatcgtgctatcgggagcgatggacggcgacgtcggtcag
gccttgttggcggaaaatgccgaacaagccaagcgttgcgccgaatattggcgggatttg
tttccgaacagtttttacctggaattacagcgggtcggtaaagcggacgaggagcgttac
attaaattagtggcggatttggctgccgagctggatttgccggtggttgccaccaacgat
gtgcgttttatcagtaaaaacgacttcgacgcgcatgaagtgcgcgtctgtatccatcag
ggccgagtgctggacgatagccgccggccgaaaaactattccgcccagcaatatttgcgt
acagccgaagaaatggccgaattgttcgccgacattccggaagcattagccaatagcgtg
gaaattgccaagcgctgcaatgtcgagctgacgctgggcgaaaactatttgcccgatttt
ccggttcccgagggcatgaccctggacgactatttcaagcaggcctcgcgccagggcctg
gaagagcgcttgatccagtatccgccggtaggcaagggcagcttcgaggaaaaccgccga
gtttatgacgagcgcttggaagtcgaactgaacgtgatcacccaaatgggttttcccggc
tatttcatgatcgtcgcggacttcatccagtgggccaagaataatgcgataccggttggt
ccgggccggggttccggtgcgggttccttggtggcttatgcattgaagattaccgacctc
gatcctatcgaatttgatttgttgttcgaacggtttttgaatccggaacgggtgtcgatg
ccggattttgatatcgacttttgcatggaacgccgcgacgaggtgatcgattacgtcgct
cggcattatggccgcgatcatgtgtcgcagatcattacctacggctcgatggcggccaag
gcggtgattcgcgacgtggggcgggtgatggggcacgcctacggtttcgtggataggctg
gcaaaattgattccatttgaaatcggcatgaccctggataaggcgctgcaagacagcgca
gagttgaaggctttgtacgataccgaggaagaagttaaatcgttgatcgatatggcgcgt
tccttggaaggtatttcccgtaatgccggcaagcacgctggcggcgtggtcatttcgccg
accaaactcaccgatttcagcccattgtattgcgagcagggtggcggcaatctggtaacg
cagtttgataaggacgatgtcgaagcggtcggcttggttaaattcgacttcttggggttg
cgtacgttgacgatcatcgattgggcgctgcagaccatcaatcaccagcgcgcgcagcgc
ggtgaagagccggtggatattagccagattccgcgcgacgacctgccaagctatgaatta
ttaaaaaacgcccagaccacggccgtgtttcagctggagtcgcgcggtatgaaggagttg
atcaaaaaactgaaaccggattgcttcgacgacattatcgcgttggtggctttatttcgt
cccggaccattggaatcgggcatggtcgatgattacatcaacgtcaagcatggcgccaaa
gctgaatacgctcatcccttgctggagccgattttaaagcctaccaacggcgttattctg
tatcaggaacaggtgatgcagattgcccgggaattggccagttataccctgggcggcgcc
gacatgttgcggcgggcgatgggtaagaaaaagccggaggaaatggccaaggaacgggaa
aaattcatgtcgggctcggtggcgaaccagatcgatgcagcgattgcgacttatgttttt
gacttgatggagaagttcgccggttacggttttaacaaatcgcactcggcggcatatgcg
ttggtagcctaccagaccgcttggttgaaggcgcattttccggccgcgttcatggctgcg
gtaatgtcgtcggatatggacaacaccgacaaagtggtggtgttgatagacgaatgccgg
gaaatgaagctggatatctgcccgccggacatcaatgtttccgatttccgtttcacggtc
aacgaccacgggcagatcgtctacggcatcggcgcgatcaaaggcgtcggcgaaaacgcg
atcgaagatttactgaaggaacgggccgccaacggaccgtttgtgggtttgtacgatctg
tgtaagcgcgtcgatttacgcaaggttaaccgccgggttttggaggcgctgatcagggcg
ggggcgctggataccatcgatcccaatcgtgcggcacatctggccgaacttaccacggcg
ctgagagttgccgaacagcatggaaagatggctctggccggtcaaaacgatttattcggt
ttggctgtacaggtcgaagtcagcgatggcgaagccgaagcttattccacagcggtcgag
ccctggaccgaaaaagaaaagctggaagcggaaaagcagactttgggtctattcctgacc
ggtcatcccatcgccgagtatctgccggaattgaagcatattacccatggctcgctcgcc
agcctggaagtcgatgccggccgttccaggggcaaaatggaagggcgggtagccggtttg
gtcgtggaaatgcgcactaggcaaaccaagcaaggcaagatgatgggcttcgcgacgctg
gatgatcgtaccggtcggctggaagtggcggctttcagcgggattttcgataaataccgg
aatttgctggcgaaggataccttgttggtcgccgaaggttcgctggcaatggacgacttt
accaatagtctgcgcatgaccgccgaaaagctctacagcatggagcaggcgcgggaaatg
tttgcccgggccatcgtgttgaattgggatagcaggcattggcagggtgagcgcagtttt
gttgatgaactggcggagacgctgagaccattttgcggcggactttgtccgatcagcatt
gagtttgcgaaaacggcagccaaagccaatctgcagttgggcgacgactggcgggtatat
cccagcgatgaattgttaacccggttaagacgcttgttgtcgttcgaagccgtgcaagtt
cggtattag
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