Methylomonas denitrificans: JT25_002220
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Entry
JT25_002220 CDS
T04191
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JT25_002220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_002220
Enzymes [BR:
mdn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JT25_002220
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JT25_002220
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JT25_002220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AMK75313
UniProt:
A0A140E4I9
LinkDB
All DBs
Position
504168..504983
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AA seq
271 aa
AA seq
DB search
MPELPEVETSRRGIAPHITGKIFKHVIVRHPQLRWPVPESLATDLPGQRLDSVERRGKYL
LLATARGTLILHLGMSGNLRITTPEQAVRKHDHIDFIFADETVLRFNDQRRFGAALWTAE
DPMLHPLLATLGPEPLSTAFDATYLQRRAANRAVPIKSLIMDSHVVVGVGNIYASEALFL
AGVKPVRSAGELSAPECEALVTAIKTVLQQAIDKGGTTLRDFSNAEGKPGYFKQSLHVYG
RGGQACLRCEEPIQQLKIGQRASYYCGNCQR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactacccgaggttgaaaccagtcggcgcggcatcgcgccgcatattaccgga
aaaatcttcaaacacgtcattgtgcgtcacccgcaattgcgttggccggttcccgagtcg
ctggcaaccgatttgccgggccagcgcctggacagcgtcgaacggcgcggcaaatattta
ttgctcgccactgcgcgaggtacgctgatcctgcatttgggtatgtccgggaatttgcgc
atcaccacgcccgagcaagccgttcgcaagcacgaccacatcgacttcatttttgccgac
gagacggtattgcgatttaacgatcagcgccgcttcggagcggcgttatggaccgccgaa
gatccgatgttacaccccttgctggcaacgctggggcccgaacccctatcgacggcattc
gatgccacctatttacaacggcgcgcggcaaaccgcgccgtaccgatcaaatccttgatt
atggacagccatgtcgtggtgggcgtggggaatatttatgccagcgaggctttattttta
gcgggcgtaaaacctgttcgttccgccggggaactgagcgcgccggagtgcgaagcgttg
gtgacggcgatcaaaaccgtattgcaacaagccatagataaaggcggcacgaccctgcgc
gactttagcaatgccgagggtaaaccgggatatttcaaacaatccttgcatgtgtacggt
cgaggcggacaagcctgcctgcgctgcgaagaaccgattcagcaactcaaaataggtcaa
cgcgccagttattactgcggcaattgccaacgctga
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