Methylomonas denitrificans: JT25_002415
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Entry
JT25_002415 CDS
T04191
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT25_002415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdn03019
]
JT25_002415
Enzymes [BR:
mdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JT25_002415
Messenger RNA biogenesis [BR:
mdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JT25_002415
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AMK75352
UniProt:
A0A140E4M8
LinkDB
All DBs
Position
544409..545548
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AA seq
379 aa
AA seq
DB search
MPFSNLGLSEALIKAIADSGYTTPTPIQSKAIPAVLTGRDLLAAAQTGTGKTAGFTLPIL
HRLAQTDHGRNRPVRALILTPTRELAAQVAESVAKYGAHQQPRLKSEVVFGGVKINPQMM
RLRGGVDILTATPGRLLDLVSQNAVKLDKVEMLVLDEADRMLDMGFIKDIRKILAMLPKK
RQNLLFSATFSADIRKLTGDLLVNPVKIEVAVENAAADTIDQRVYTVSKTAKTALLTHLV
KTKDWQQVLVFTSTKHGANKLTEKLNIANIKAAAIHGNKSQGARTSALAGFKAGDIRVLV
ATDVAARGIDIAQLPHVVNFELPRSSADYVHRIGRTGRAGQNGQAVSLVSQDEYQALRLV
EKLIGLQIPREQVDGFAAA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgccattttccaatctcggtttatccgaggctttaataaaagctattgccgattccggc
tacacgacccctacccctattcaaagtaaagccatacccgccgtgttaaccggccgcgat
ttactggccgccgcgcaaaccggcaccggcaaaaccgccggctttaccttgccgatcttg
catcgcttggcgcaaaccgaccatggccgcaatcgcccggtgcgcgcactgatcctgacc
cctacccgcgaactggccgcgcaagttgcggaatccgtcgctaaatacggcgcgcatcag
caaccgcgcctaaagtcagaagtcgtgttcggcggcgtaaagatcaatccgcaaatgatg
cgtttgcgcggcggcgtggacattctgaccgcaacgccggggcgtctgctggatttggtc
agccaaaacgccgtgaagctggataaggtggaaatgttggtgctggacgaagccgaccgc
atgctagacatgggctttatcaaagacattcgcaaaatcctggcgatgctgccgaaaaag
cgccaaaacctgttgttttccgcgacgttttccgccgacatccgcaagttgaccggcgat
ttgctagtcaacccggtcaaaatcgaagtggccgtcgaaaacgccgccgccgacacgata
gaccaacgggtgtatacggtcagtaaaaccgcgaaaaccgccttgttgacccatctggtg
aaaactaaagactggcagcaagtattggtgtttaccagtaccaagcacggcgcgaacaaa
ctcaccgaaaaactgaacatcgccaatattaaggctgccgcgattcacggtaataaaagc
cagggcgccagaaccagtgccttggccggtttcaaagccggcgacattcgcgtgttggtc
gcaaccgacgtcgcagcgcgcggcatcgatattgcccaattgccgcatgtggttaatttc
gaattaccgcgctcgtccgccgattatgtacaccgcatcggtagaaccggtcgggccgga
caaaacggccaagcggtttcgctggtatcgcaagacgaatatcaggccttgcgcctagtt
gaaaaactgataggcctgcaaataccccgcgaacaggtagacggcttcgcggccgcttaa
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