Methylomonas denitrificans: JT25_004160
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Entry
JT25_004160 CDS
T04191
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03420
Nucleotide excision repair
mdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JT25_004160 (uvrD)
03430 Mismatch repair
JT25_004160 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_004160 (uvrD)
Enzymes [BR:
mdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JT25_004160 (uvrD)
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JT25_004160 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JT25_004160 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
DMP19
Motif
Other DBs
NCBI-ProteinID:
AMK75683
UniProt:
A0A126T0S3
LinkDB
All DBs
Position
891188..893353
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSSIITSLNDDQRLAVSAPMQAMLVLAGAGSGKTRVLVHRIAWHIQVNHISPYNILAV
TFTNKAANEMRNRIEELLETPARAMWIGTFHGLAHRLLRQHAKQANLPETFQVMDSDDQL
RIIKRLMKNLNLDDSKWPPKQAQWFINAQKDEGIRAKHMQDSGDFYNRQMKQVYLAYEEV
CQRSGLVDFAELLLRAHELLRDNEDLLAFYRQRFQQVHVDEFQDTNTIQYAWLRLLTEGN
NNLFVVGDDDQSIYGWRGAKIENIFNFQKHYPEHGIVRLEQNYRSSGHILKAANTLIANN
DNRMGKELWTDAGEGHAISLYSAFNEQDEAYFVVEKIRQWVKDGGLRSDTAILYRSNAQS
RQFEERLMTTATPYRVYGGLRFFERMEIKNALAYLRLSTNPHDDPSFERVVNTPTRGIGA
KTLDDMRILAREQQLSLWQAALAMLEQNQLPARAANALRGFLNLIIALGETTKDLSLHET
VKQVVETSGLIELYKKEKQDKGEARVENLEELVNAARLFDYDSENAENLGELDMFLAHAA
LEAGEMQGEVDEDCVQLMTLHSAKGLEFKLVFLVGLEEGLFPSQQALDDAGRLQEERRLC
YVGITRAMQQLYLTHAESRRLYGKDSYPRASRFLRELPQESIQEIRLRANVSRPAANSAP
QAKNLGSKGTYKLGQPVRHEKFGEGVVLQMEGEGEQERVQINFRNAGIKWLMLAYAKLDA
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtctcttctattatcacctccttaaacgacgaccaacgtctggccgtttccgca
ccgatgcaagccatgctggtgctggccggcgccggcagcggcaaaacccgggtgctggtt
caccgcatcgcctggcacatccaggtcaaccacatttcgccttacaatattctagcggtg
acgtttaccaataaagccgccaacgaaatgcgcaaccgtatcgaagagttactcgagacc
ccggcccgcgcgatgtggataggcaccttccacggtctggcgcaccgtttgttgcggcaa
cacgccaaacaagccaatctgccggaaacctttcaagtgatggatagcgacgaccaattg
cgtatcatcaaacggctgatgaaaaacctgaatctggacgatagcaaatggccgcccaaa
caagcgcaatggtttatcaatgcccaaaaagacgagggcatccgcgccaaacatatgcaa
gatagcggcgatttttataaccggcagatgaaacaggtttatctggcctacgaagaagtt
tgtcagcgttccggcttggtggattttgccgaattgctgctgcgagcccacgaactgctg
cgcgataacgaagatttactggcgttttaccggcagcgcttccaacaagtccacgttgac
gaattccaggacaccaacaccatccaatacgcatggcttagactgctcaccgaaggcaac
aacaacctgtttgtggtcggcgacgacgaccaatcgatctatggctggcgcggtgccaaa
atcgaaaatatcttcaatttccaaaaacactatcccgagcacggcatcgttcgcctggag
caaaactaccgctccagcggccatatcctgaaagccgccaataccttgatcgccaataac
gacaacaggatgggtaaggaattgtggaccgatgccggtgaaggccacgccatttccttg
tactcggcgtttaacgaacaagacgaggcctatttcgtggtcgaaaaaattcgacaatgg
gtcaaagacggcggcttgcgcagcgatacggcgattctgtaccgctccaatgcccaatcc
cgacaattcgaagaacgcttgatgaccaccgccaccccttaccgggtttacggcggcctg
cgctttttcgagcgcatggaaatcaagaatgccctcgcctatttgcgcctgtcgaccaac
ccgcacgacgacccgtcgttcgaacgcgtagtcaacacgccaacccgtggcatcggtgcg
aagaccctggatgacatgcgtatcctggcccgcgagcagcagctctcactctggcaagcc
gccttggcgatgctggaacaaaatcagctacctgcccgtgccgccaacgccctgcgcggt
tttttaaacctgatcatcgcgctcggcgaaaccactaaagatttgagcctgcatgaaacg
gtcaaacaagtcgtcgaaaccagcggcctgatcgagctgtataaaaaagaaaaacaagac
aaaggcgaagcccgggtggaaaacctggaagagttagtcaacgccgcccgcttgttcgat
tacgacagcgaaaacgcggaaaacctgggcgagctggacatgtttttggcgcatgctgca
ttggaagccggcgaaatgcaaggtgaagtcgacgaggattgcgtgcagttgatgacgctg
cattcggccaagggcttggagttcaagctggtgtttctggtgggcttggaagaaggccta
ttcccctctcaacaagccttggacgacgccggacgattacaggaggaacgccggctttgc
tacgtcggcatcacgcgcgcgatgcaacagctgtatttgactcacgccgaatccaggcgt
ctctacggcaaagacagctatccgcgtgcctcgcgatttttacgcgaactgccgcaggaa
tcgattcaagaaatcagattgcgcgccaatgtcagtcggccggcggctaatagcgcaccg
caagcgaaaaacctgggcagcaagggtacctacaaactgggccaacctgttaggcacgaa
aaattcggcgaaggcgtggtactgcaaatggaaggagaaggcgaacaggaacgggtgcag
attaatttccgcaatgcaggcatcaaatggctgatgctggcttacgccaagctggatgct
gcataa
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