Methylomonas denitrificans: JT25_004625
Help
Entry
JT25_004625 CDS
T04191
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT25_004625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdn03019
]
JT25_004625
Enzymes [BR:
mdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JT25_004625
Messenger RNA biogenesis [BR:
mdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JT25_004625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_25
CMS1
AAA_19
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AMK75776
UniProt:
A0A126T117
LinkDB
All DBs
Position
complement(992030..993313)
Genome browser
AA seq
427 aa
AA seq
DB search
MLFSELGLSEQLLKAVAEQGYETPTPIQAQAIPVILQGRDVLAGAQTGTGKTAGFTLPLL
QLLQGQPVPQKPRPVRVLILTPTRELAMQVYESVRTYGKHLPFFAEAIFGGVSINPQIQK
IQRGTDIVVATPGRLLDLIQQQHLDLSKVEHFVLDEADRMLDMGFIRDIRRIIALLPSKR
QNLLFSATYAPEISALAEQILNDPVEIAVAKRNAAADTVSQLVYGINREYKRELLSYLIG
NGHWQQVLVFVRTKHGADRLAKQLIKDGIRCAALHGDKSQGARVRALEEFKNGSITALIA
TDIAARGLDIDQLPHVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVDPEEAYLLAAIE
KLLKRQIPRVDDTGYPNVSLAVTNSKPQPKPAQPNKPARRPQNGRPGEAAKRAPNSRKPR
PQAAKPR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgttattttcagaattgggtttgtccgagcagcttcttaaagccgttgccgagcaaggc
tatgaaactcccacaccgattcaggcgcaggctatcccggtcattttgcaaggccgcgat
gtgttggccggcgcgcaaaccggcaccggcaaaaccgccgggtttaccttgcctttgctg
cagttgctgcaaggacagccggttccgcaaaagccgcgtccggttcgggtattgatttta
acgccgacccgcgaattggcgatgcaggtttatgaaagcgtcagaacctatggcaagcat
ttgccgttttttgccgaggcgatttttggcggcgtcagtattaatccgcagattcagaag
atccaacgcggcaccgatattgtcgttgcaacacccggtcgattgctggatttgattcag
caacagcatctggatttatcgaaggttgaacattttgtactcgacgaagccgaccggatg
ctggatatgggctttatccgcgatattcgtcgaatcatcgctttgttgccgagtaaacgc
cagaacctgctgttctcggcgacctatgccccggaaattagtgcgctggcggaacaaata
ctcaatgatccggtagaaatcgctgtcgcgaagcgcaatgccgccgccgataccgtctcg
caattggtttatggcattaaccgcgaatacaagcgcgaattactgtcctacctgatcggc
aacggccattggcagcaggtattggtgttcgtccgcaccaaacacggcgcggaccgtttg
gccaagcagttgatcaaggatgggatccgctgcgcggccttgcatggcgacaagagtcag
ggggctcgcgtccgggccttggaggaatttaaaaacggctcgatcaccgcactaatcgcc
accgacatcgccgcgcgcggcttggacatcgaccaattaccgcatgtggtgaatttcgat
ttgccgcaagtagcggaagactatgtgcaccgcatcgggcgtaccggccgtgccggcgcc
gaaggtcaggccatttcgctggtcgatccggaagaggcctatttgttggccgctatcgag
aagctgttgaaaaggcagattccgcgagtagacgataccggctatcccaacgtgtcattg
gcggtgaccaatagcaaaccgcaaccgaagccggcacagccgaacaagccggccaggcgg
ccgcagaatggccgtccaggggaggcggctaaaagggcgcccaattcgcgtaaaccgcgt
ccgcaagcggccaagcctcgctaa
DBGET
integrated database retrieval system
