Methylomonas denitrificans: JT25_006785
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Entry
JT25_006785 CDS
T04191
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JT25_006785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_006785
Enzymes [BR:
mdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JT25_006785
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JT25_006785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
AAA_30
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AMK76199
UniProt:
A0A126T2A1
LinkDB
All DBs
Position
1457212..1460655
Genome browser
AA seq
1147 aa
AA seq
DB search
MSLPLIPAAALPQQPTTVFWSGLSGCGDSFTLAQAITQEKRLLVIVTPDTQTALRLEHEL
AFFLDNSLPILHFPDWETLPYDVFSPLPEIISERLRTLALLPDTKRGALILSVATLMHRL
APREHILAHSFAIEVGGTLSLEVTRAKLEAVGYQCVSQVYQHGEFAVRGSILDLFPMGSK
QPYRIELFDDDVESIRSFDPDTQMSQDKMQKVELFPAREFPFTDEAIKRFRQAFREQFPD
ASPKNNLYLDVSKQIAPAGIEYYLPLFVERTESLFAYLPKTALFVLPANFAENAQRFYSE
ADERYQQRKYDTDRPLLPPTRLFLSAEEIQQHTDNFSRAVLDNEAETAHSFDCKLLPDVA
IDSRLKEPAQRLRQFIEGFDGKILFVAETAGHREGLIDKLKSVKLAAKQVQSWPEFLQTD
HSPCIVVAPMDHGLWLESTKLAIITESQLSGEKVQQRRRRQKSAARALENIFNNLDELTI
GSPVVHQEHGVGRYLGLQILNVGGIDAEFLMLEYANNDKIYVPVASLHMIGRYSGVSAEN
APLHRLGTDQWSKAKKKAMERARDVAAELLDIHAKRAAREGFAFNIDNSDYNAFAAAFPF
EETPDQLSAIEAILQDMAATQPMDRVVCGDVGFGKTEVAMRAAFVAVQSGKQVAVLVPTT
LLAQQHYQNFRDRFADWPVRIEVTSRFVTPKQQKAIADDLADGKVDIVIGTHKLLSKEMK
YKALGLVIIDEEHRFGVTQKEHFKKLRHELDLLTLTATPIPRTLNMAMAGLRDISIIATP
PPNRHAIKTFVTEWIDSQVQEACQREIKRGGQVFFLHNDVKTMDKMMRELGELVPEARIQ
IAHGQMAERELEQIMLDFYHQRFNLLIASTIIESGIDIPSANTIVINRADKLGLAQLHQL
RGRVGRSHHRAYAYCIVPPKSLMTKDAIKRLEAFETSGELGAGFMLSSHDMEIRGAGELL
GDEQSGQIQEIGFTLYTELLERAVKALKSGKQPELDAPLDTGPEVDLQVAALIPEDYLPD
IHARLVLYKRIASAETEDDLRKLKIEMIDRFGLLPDQVKALFAITELKQQAAHLGIRKIE
AHATGGRIVFTSAPQIDTGELILMIQSQSQVYKFDGADKLRFTQTFKDMEDKVVFLEKLL
ARLGAKP
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctttaccgctaatacccgccgctgcattgccgcagcaacccaccacggtattctgg
agcggcctgagcggctgcggcgactcgtttacgctggctcaagccatcacccaggaaaaa
cgcctgttggtcatcgtcacgccggacacccaaaccgcgttgcgtctggaacatgaactg
gcatttttcttagacaacagcctgccgattctgcattttccggattgggaaaccctgcct
tacgacgtattctcgccgttgccggaaatcatctcggagcgcttgcgcaccctggccttg
ctacccgacaccaaacgcggcgcgctgatcctgtcggtcgcaaccctgatgcaccgcctg
gcgccgcgcgagcatattctggctcacagctttgccatcgaagtcggcggcaccctgagc
ctggaagtcacccgcgccaaactggaagcggttggctatcaatgcgtgtcgcaagtctat
caacacggcgaattcgcggtgcgcggttcaatcctggacttgttcccgatgggttccaag
caaccttaccggatcgaattgttcgacgacgacgtcgagtcgatccgcagcttcgacccg
gacacgcaaatgtcgcaagacaaaatgcaaaaagtcgaactatttccggctcgcgagttt
ccatttaccgacgaagccatcaaacgcttccgccaggccttccgcgagcaattcccggac
gcctcgcccaaaaacaatctgtacctcgacgtttccaagcaaatcgccccggccggcatc
gaatattacttgccgctattcgtcgaacgcaccgaatcgctatttgcctatttacccaag
actgcgttgtttgtgctgccagccaactttgccgagaacgcccagcgtttctacagcgaa
gccgacgaacgctaccagcaacgcaagtacgataccgaccgcccattgttgccgccgacc
cgcctgtttctgtcggccgaagaaatccagcaacacaccgataacttcagccgcgccgtg
ctggacaacgaagcggaaaccgcccactcgtttgactgcaaattgctgcctgatgtggcg
attgacagtcgattgaaagaacccgcgcaacgattgcgccaattcatcgaaggttttgac
ggcaaaatcctgttcgttgccgaaaccgccggccaccgcgaaggcctgatcgacaagctg
aaaagcgtcaaactcgccgccaaacaagtgcaaagttggccggaatttctgcaaaccgac
cattcgccgtgcatcgtcgtcgcgccgatggatcatggtctgtggctcgaaagtacaaaa
ctagccatcatcaccgaaagccagctcagcggcgagaaagtccagcaacgccggcgccgg
caaaaatcggcggctcgtgcactggaaaacatcttcaacaacctcgacgagctgaccatc
ggttcgccggtggtgcatcaggaacacggcgtcggccgctacctgggcttgcagatcctc
aacgtcggcggcatcgacgccgaatttttgatgctggaatacgccaataacgacaaaatt
tacgtgccggtggcctccttgcacatgatcggccgttacagcggcgtcagcgccgaaaac
gccccgctgcaccgcctcggcaccgaccaatggagtaaagccaagaaaaaagccatggag
cgcgcccgcgacgtggccgccgaattgctggacatccacgccaaacgcgccgcccgcgaa
ggctttgcctttaacatcgataacagcgactataacgcttttgccgccgccttcccgttc
gaggaaaccccggatcagctcagcgccatcgaggccatcttgcaagacatggccgccacc
caaccgatggaccgtgtagtctgcggcgatgtcggtttcggcaaaaccgaagtggcgatg
cgcgcggcctttgtcgcagtgcaaagcggcaaacaggtcgcggtactggtgccgactacc
ctgctcgcccagcagcattatcaaaacttccgcgaccgcttcgccgactggccggtacgg
atcgaagtcacctcgcgctttgtcacgcccaaacagcaaaaagccatcgccgatgacttg
gccgacggcaaggtcgatatcgtcatcggcacccacaaattgttgtccaaggaaatgaaa
tacaaagcactaggcctggtgatcatcgacgaggaacaccggtttggcgtgacgcaaaaa
gaacatttcaaaaagctgcgccacgagctggacttgttgacgctgaccgcgacgccgatc
ccgcgtacactgaacatggccatggccggactgcgcgatatttccatcatcgccaccccg
ccgccaaaccgccatgcgatcaaaacctttgtcaccgaatggatagactcgcaagtgcag
gaagcctgccaacgggaaatcaagcgcggcggccaggtattttttctgcacaacgacgtc
aagaccatggacaaaatgatgcgtgagttgggcgaactggtgccggaagcgcggattcag
atcgcccatgggcagatggccgaacgcgagctggagcaaatcatgctggatttttatcac
cagcgtttcaatctgctgattgccagcactatcatcgaaagcggcatcgacatccccagc
gccaacaccatcgtcatcaaccgcgccgacaaactgggcctggcccagttacaccagttg
cgcggccgggtcggccgttcgcatcaccgcgcgtatgcctactgcatcgtgccccccaag
tcgttaatgaccaaagatgcgatcaaacgcctggaagccttcgaaacatccggcgaactc
ggtgccggcttcatgctgtcttcgcatgacatggaaatccgcggtgccggcgagttgctg
ggcgatgaacaaagcggccagattcaggaaataggttttaccttgtacaccgagttgctg
gaacgcgcggtcaaagccttgaaatccggcaaacaaccggaactggacgcgccgttggac
accggccccgaagtggatttgcaagtcgccgcgctgattccggaagactacttgccggac
atccacgcccgcctagttttgtacaaacgcatcgccagcgccgaaaccgaagacgatttg
cgcaagttaaaaatcgaaatgatcgaccgcttcggcttattgccggatcaagtcaaagcc
ttgttcgcgatcaccgaactgaaacaacaagctgcgcatctgggcatccgcaaaatcgag
gcccacgctaccggcggccgcatcgtgtttacctcggcgccgcaaatcgataccggcgaa
ttgatcctgatgattcaaagtcagtcgcaggtgtataaattcgacggtgcggataaatta
cgctttacccagacctttaaggatatggaggataaagtggtgtttttggagaagttgctg
gcgaggttgggggcgaaaccttag
DBGET
integrated database retrieval system
