Methylomonas denitrificans: JT25_011725
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Entry
JT25_011725 CDS
T04191
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT25_011725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdn03019
]
JT25_011725
Enzymes [BR:
mdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JT25_011725
Messenger RNA biogenesis [BR:
mdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JT25_011725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Thioredoxin_8
CMS1
ERCC3_RAD25_C
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AMK77145
UniProt:
A0A126T4X5
LinkDB
All DBs
Position
complement(2551566..2552906)
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AA seq
446 aa
AA seq
DB search
MKKTHLTETRFSNLELSDSIIKGLKEAGFINCTPIQDKSLPLSLRGKDIAGQAQTGTGKT
ATFLLATFQHLINDESEKIKNPRALILAPTRELAIQIHKDALALSKYLNLKFALIYGGTD
YQKQLDKIKGNVDIIIGTPGRIIDFYRQGAFTLENIQVTVMDEADRMFDLGFIKDIRFLL
RRMPPAEKRLNMLFSATLSYKVTELAYEHMNNPVLIRIESEEVTSKAINQVAYCPANEQK
IPLLLGLLKQHQPQRSIVFVNTKRCAEQLDDYLQANGHKTAMLSGDVPQEKRQRLLNDFQ
ENRVTLLIATDVAARGLHIPDVSHVFNYDLPQDVEDYVHRIGRTARFGASGEAISFICEE
YAYSMPDIEDYIGEKVPVQAITPELMVEDVIKPERREPRERVMQRDKRAPRSEHKPREHR
PARPQPATNQASTPENPPPPQTQQPA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaacacatttgacggaaacgcgttttagcaatttggagctgtccgactccatc
attaaaggtctgaaagaagcaggatttatcaactgcacacccattcaggataaatccctg
cccttatcgttaagaggcaaggacattgccggccaagcccaaaccggcaccggcaaaacc
gccacgtttctgctggcgacctttcagcatctgatcaacgacgaaagcgaaaaaatcaaa
aacccgcgcgcgctgatcctggcgccgacccgcgaactggcgattcagattcataaggat
gcactagccctaagcaagtatctgaacctgaagtttgccttgatctacggcggcaccgac
tatcaaaagcagctggataaaatcaaaggcaatgtcgacatcatcatcggtacaccaggc
cgcatcatcgacttttaccggcaaggcgctttcacgctggagaatattcaagtcaccgtg
atggacgaagccgaccgcatgttcgatttgggctttatcaaggacattcgcttcttgctg
cgccgcatgccgccggctgaaaaacgcttgaacatgctgttttcggccacgctgtcctat
aaagtcaccgaactggcttacgagcatatgaacaacccggtgctgatccgtatcgagtcc
gaggaagtcacctcaaaagctatcaatcaggtagcttactgcccggccaacgaacaaaaa
attccgctgttgctgggcttactgaaacaacaccagccgcagcgcagcatcgtgtttgtc
aacaccaaacgttgcgccgaacaactggacgattatctgcaagccaacggccataaaacc
gcgatgctcagcggcgacgtgccgcaggaaaaacgccagcgcctgctcaacgattttcag
gaaaatcgggtcacgctgttgatcgcgaccgacgtggcggcgcgcggtttgcatattccg
gacgtatcgcatgtgttcaattacgacttgccgcaggatgtagaggattacgtacacaga
atcggccgtaccgcccgtttcggcgccagcggcgaagcgatcagctttatttgcgaggaa
tacgcttattcgatgccggacatcgaggattacatcggcgagaaagtgcctgtgcaagcc
atcacgccggagttaatggtggaagatgtgatcaaacccgaacgccgcgaaccgcgcgaa
cgggtcatgcagcgcgacaaacgcgcgccgcgttcagagcacaaacccagagaacaccgg
ccggcgcgcccccaacccgctacaaaccaggcatcaacgcccgaaaatcctccaccgccg
caaactcagcaacctgcctga
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