Methylomonas denitrificans: JT25_012125
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Entry
JT25_012125 CDS
T04191
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03030
DNA replication
mdn03410
Base excision repair
mdn03420
Nucleotide excision repair
mdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JT25_012125
03410 Base excision repair
JT25_012125
03420 Nucleotide excision repair
JT25_012125
03440 Homologous recombination
JT25_012125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdn03032
]
JT25_012125
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_012125
Enzymes [BR:
mdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JT25_012125
DNA replication proteins [BR:
mdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JT25_012125
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
JT25_012125
NER (nucleotide excision repair)
GGR (global genome repair) factors
JT25_012125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
DNA_pol_lambd_f
HHH_5
Enoyl_reductase
Motif
Other DBs
NCBI-ProteinID:
AMK77222
UniProt:
A0A126T577
LinkDB
All DBs
Position
2644181..2646928
Genome browser
AA seq
915 aa
AA seq
DB search
MSDSAPNKLILVDGSSFLFRAFHAVPPLTNAQGEPTNAVYGVSNMLRKLINDYNTPYITV
VFDAPGKTFRHDLYDQYKAHRPPMPDDLRVQIAPLHDLIRSLGLPLIIEHGVEADDVLGS
LAQNAARQGFEVIISTGDKDMAQLVNEQITLENTMTNTRMDIQGVQEKFGVMPEQIIDYL
ALMGDAVDNIPGVPKVGPKTAAKWLQEYGTLDNLIARADEIKGKIGDNLREALGQLPLSR
ELTTIKCDVALHYSLDDLKRTEPDMAALKNQLGHLGFSSWLKTLNGDIAPATAPAPTTIA
TQTPVELVKPAAPTKDYQTILTQTDFAAWLDKLKQAELFAFDTETTSLNYSDAQIVGVSF
AVDAGQAAYLPVAHDYPDAPAQLDRQTVLDALKPLLEDPQKAKLGQNLKYDSHVLVNHGI
ALRGIQHDTMLESYVLNSTATKHNMDDLAKHYLGVDTIHFEDVAGKGAKQIGFAEVAIEQ
ASEYAAEDADITLRLHQTLSAQLQQHPSLWALYNEIEVPLISVLARIEENGVLIDSAMLA
QQSLELANRMIGIEQQAHDLAGSAFNLGSPKQIQEILYDRLNLPVLKKTPKGQPSTDESV
LQELAVDYALPRLILDFRGMSKLKSTYTDKLPQQVNNRTGRVHTSYHQAVAATGRLSSSD
PNLQNIPIRSEEGRKIRQAFIAPPGYKIVAADYSQIELRIMAHLSGDAGLLAAFSQGVDV
HRATAAEVFEVELEQVTHDLRRSAKAINFGLIYGMSAFGLAQQLGLPRNQAQAYIDLYFS
RYPGVKQYMDNTRELAKQQGYVETIFGRRLYLPEINSRNAAMRQYAERTAINAPMQGTAA
DIIKRAMLACDAWIGADNPDVKMIMQVHDELVFEVAETRLAEHMETIRGIMSAAAELHVP
LLVEVGSGENWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattccgccccaaacaaactgatcctggtcgacggctcgtcgtttctgtttcgc
gccttccatgcggtaccgccattgaccaatgcgcagggcgagccgactaacgccgtttat
ggcgtgtccaatatgttgcgcaaactgatcaacgactacaacacgccctatatcaccgtg
gtgttcgatgcgccgggcaagaccttccgtcacgatttgtatgatcaatacaaagcccat
cggccgccgatgccggatgatctgcgcgtgcaaattgcccccttgcacgatttgattcgc
tcgctgggcttgccgctaattatcgagcacggcgtggaagccgacgatgtgctgggcagc
ctggcgcagaacgccgcgcgccaaggctttgaagtgattatttccaccggcgataaggac
atggcgcaattggtgaacgagcaaattacgctggaaaacaccatgaccaacacccgcatg
gatattcagggtgtacaggagaagttcggcgtgatgccggagcaaattatcgattatctg
gcgctgatgggcgacgcggtggacaatatccccggcgtgccgaaagtcggtcctaaaacc
gccgccaaatggttgcaggaatacggcacgctggacaacctgatcgcccgcgccgacgag
atcaaaggcaagatcggcgacaatttgcgggaggccttgggccagttgccgctgtcgcgc
gaactgactaccatcaaatgcgatgtggccttgcattacagcttggacgatttaaaacgc
acggagccggacatggccgcgctgaaaaatcaattggggcatttgggctttagcagttgg
ctgaaaaccttgaacggcgatatcgcgcctgccacagctcccgcgccgacaactatcgct
acccaaacaccggtcgaattagtaaaaccggcagcgcctaccaaggattaccaaaccatc
ctcacccaaaccgatttcgctgcctggctggataaactcaagcaagccgagctgttcgcc
ttcgacaccgaaaccaccagtctgaattacagtgatgcgcaaatcgtcggagtgtcgttt
gcggtagacgccggccaggccgcttatctgccggtggcgcacgattatcccgatgcgccg
gcccagctcgatcggcaaaccgtattggatgccttgaaacccttgctggaagacccgcaa
aaagccaagctggggcaaaacctgaaatacgatagccatgtgttggtcaatcacggcatc
gcgctacgcggcatccagcacgacacgatgctggagtcttacgtgttgaacagcaccgcg
actaaacacaatatggacgatctggccaagcattacctgggcgtggacaccattcatttc
gaagacgtggccggcaagggtgcgaagcagatcggctttgcggaagtcgctatcgagcag
gccagcgaatacgccgccgaggatgccgacatcaccctgcgcctgcatcaaaccctgtcc
gcgcaattacaacagcaccccagtttatgggctttgtataacgagatcgaagtgccgctg
atcagcgtgttggcgcggatcgaggaaaatggcgtgttgatcgacagcgcgatgttggcg
cagcaaagcctggagttggcgaaccggatgataggcatcgaacagcaagcccacgatctg
gccggctcggcattcaacctcggttcgcccaagcagattcaggaaatcttgtacgaccgt
ttaaatttgccggtgctgaagaaaaccccaaaaggccagccttccaccgacgaatcggtg
ttgcaagagttggcggtggattatgccttgccccgcttgattttggattttcgcggcatg
agcaagctcaaatccacctacaccgacaaactgccgcagcaggtcaacaaccgcaccggt
cgggtgcatacgtcttatcatcaggccgtagccgcgaccgggcgcttgtcctcgtccgac
cccaatctgcaaaacatcccgatccgtagcgaagagggccgcaagattcggcaggccttt
atcgccccgcccggctataaaatcgtcgccgccgactattcgcaaatcgagctgcggatc
atggcgcatctatccggcgacgccggcctgctggcggcgttttcgcaaggcgtggatgtg
catagagccacggcggcggaagtattcgaagtggagctggagcaagtcacccatgatttg
cgccgttccgccaaggccatcaattttggtctgatctacggcatgtcggcgttcggatta
gcgcagcaattgggcttgccgcgcaatcaggctcaggcttatatcgatctatacttcagc
cgttaccccggggtgaaacagtatatggacaacacccgcgaattggccaagcagcaaggt
tatgtcgaaaccatcttcggccgccgcctgtatttgccggaaatcaactcgcgtaacgcc
gcgatgcgccagtacgccgaacgtactgccatcaatgcgccgatgcaaggcaccgccgcc
gacatcatcaaacgggcgatgctggcttgcgatgcctggatcggcgcggataatccggat
gtgaaaatgatcatgcaggtacatgacgaactggtgttcgaggtagcggaaacacgcttg
gcggaacatatggaaaccatccgtggcatcatgtcagccgccgcagagctgcatgtaccc
ttgctggttgaagtcggcagcggtgagaattgggacgaagcgcattga
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