Methylomonas denitrificans: JT25_015570
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Entry
JT25_015570 CDS
T04191
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT25_015570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdn03019
]
JT25_015570
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_015570
Enzymes [BR:
mdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JT25_015570
Messenger RNA biogenesis [BR:
mdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JT25_015570
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JT25_015570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
HTH_40
RecQ_Zn_bind
ResIII
HTH_22
Motif
Other DBs
NCBI-ProteinID:
AMK77878
UniProt:
A0A126T750
LinkDB
All DBs
Position
3362058..3364190
Genome browser
AA seq
710 aa
AA seq
DB search
MTNSPALQTLRSVFGYDSFRGQQQQIIEQLIAGQDVLVLMPTGGGKSLCYQIPALVMDGV
GIVISPLIALMQDQVSALHQVGVRAAYLNSTLALEQVRDIEQRLQNGELDLLYIAPERLS
NARTQALFARCKIALFAIDEAHCVSQWGHDFRADYLLLSVLHEQFPKVPRIALTATADER
TRQEIITRLALEQAQVFVSGFDRPNIRYRIIQKDNARQQLLNFIRTEHPGDTGIVYCLSR
KKVEETAEWLNDKGLKALPYHAGMEHRERQKNQHQFLMEDGLIIVATIAFGMGIDKPNVR
FVAHLDLPKSVEAYYQETGRAGRDGLPANAWMAYGLQDVLTLRQMLSTSNADEAHKRVEL
HKLDAMLALCEMVSCRRQALLGYFGDVLEQGCGNCDTCLEPVETWDGSVAAQQALSAIYR
TGQRFGVTYLIDVLLGKADERMRQFGHDKQSTFGIGKALDEKQWRSVFRQLVAKSLVEID
FEGHGSLKLTDACRPVLRGEQTLMLRKDAQIAKTRREKAEKRQPGGAADSALWNALRAKR
KELADEQDVPPYVIFHDATLMAMVDARPRNHQQLSMLSGIGQRKLELYGDEFLAVLAQFD
DEPAVSATDTVAESLDLFRLGYSVEQVAKQRSLSEDTIYNHMAKSLELGLVALGDVLSLS
PAEVSEIEAVLLSLPEEQRNALKPVYEQLGGAYSYGVLRCVRAALQQQLG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgactaattctcccgccctgcaaaccctgcgtagcgtgttcggctacgacagctttcgc
ggccagcagcaacagattatcgaacaattgatagccggccaggacgtgttggtgttgatg
ccgaccggtggcggcaagtcattgtgttatcaaattccggccttggtgatggatggggtg
ggcatcgtgatttccccgctgatcgcactgatgcaggatcaggtcagtgccttgcaccag
gtgggcgtaagagcggcctatttaaattccacgctggcgctggaacaggttcgcgacatc
gaacagcgcctgcaaaacggcgaactggatttgctgtacatcgccccggaacgcttatcc
aacgccagaacccaggctttgttcgcgcgctgtaagattgccttgtttgctatcgatgag
gcgcattgcgtgtcgcaatggggccacgattttcgcgccgattacttgctgttgtcggtg
ttacacgaacaatttcccaaggtgccgcgcattgccttaactgcgactgccgacgaacgt
acccgtcaggaaatcattacccgtctggcgttggaacaagcgcaagttttcgtcagtggg
ttcgaccggccgaatatccgttaccgaatcattcagaaagataacgcccgtcagcaacta
ctaaactttatccgcaccgagcaccccggcgataccggtatcgtctattgcctgtcgcgg
aaaaaagtcgaggaaaccgccgagtggctgaacgataaaggcttgaaagccctgccgtat
cacgccggcatggagcatcgagagcggcagaaaaatcagcatcagtttttgatggaagac
ggtttgatcatcgtcgccacgattgcttttgggatgggcatagacaaacccaacgtgcgc
ttcgtggcccatctggatttaccgaaaagcgtggaggcttattaccaggaaaccggccgc
gccggccgcgacggcttgccggccaacgcctggatggcgtatggtttgcaggacgtgttg
accctgcggcaaatgctcagcacctccaatgccgacgaagcgcataagcgcgtggaattg
cacaaactggatgcgatgctggccttgtgcgaaatggtcagttgccggcgccaagccttg
ctaggttattttggcgacgtgctggagcagggctgcggcaattgcgatacctgcctggag
ccggtggaaacctgggacggcagcgtcgccgcccaacaagccttgtcggcgatttatcgc
accggacagcgctttggcgtgacgtatttgatcgacgtgttgctgggcaaagccgacgag
cgcatgcgccaattcggccacgacaagcagtcgacgtttggcattggtaaggcgttggac
gaaaaacaatggcgctcggtgtttcggcaattggtcgccaagtcgctggtggaaatcgat
ttcgaaggccacggcagcctgaaactgaccgatgcctgccggccggtattgcgcggcgag
caaaccctgatgctgcgtaaggatgcgcaaatcgccaagacccggcgcgaaaaagccgaa
aaacgccagccgggcggggctgcggatagcgccttgtggaatgccttacgcgccaaacgc
aaagagctggccgacgagcaggacgtgccgccctatgtgatttttcacgatgctactttg
atggctatggtcgacgcccggccgcgcaatcatcagcaactgagcatgctgtccggcatc
ggtcagcgtaagctggagttatacggcgatgagtttctggcagtgttggcccagttcgac
gacgagccggctgtgtcggctaccgacacggttgcggaaagtctggatttgttcaggttg
ggttacagcgtcgaacaagtagccaagcaacgcagtctgagcgaagacaccatttacaat
cacatggccaaaagtctggaattggggctggtggcgctgggcgatgtgttgagtttgtcg
ccggcggaggtcagtgaaatcgaggcggtgttgttgagtttgccggaagagcaacgcaac
gcgttgaagccggtctacgagcaactgggcggcgcttacagttacggcgtgttgcgttgc
gtcagagcggctttacagcagcaacttggctaa
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