Methylomonas denitrificans: JT25_019635
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Entry
JT25_019635 CDS
T04191
Name
(GenBank) ATP-dependent RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
mdn
Methylomonas denitrificans
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mdn03009
]
JT25_019635
Enzymes [BR:
mdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JT25_019635
Ribosome biogenesis [BR:
mdn03009
]
Prokaryotic type
rRNA helicases
JT25_019635
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_22
CMS1
Peptidase_C14
Motif
Other DBs
NCBI-ProteinID:
AMK78673
UniProt:
A0A140E5J9
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All DBs
Position
complement(4278375..4279763)
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AA seq
462 aa
AA seq
DB search
MNTPEFSSLPLKPALLENIESLGYTHLTPIQAESLPHILEGKDVIAQAKTGSGKTAAFGI
GLLSRLDLSSFKVQAMVICPTRELADQVCKEIRQLARFTQNIKVLALCGGTPFAPQRSSL
EHGVHVVVGTPGRLQEHLQKASLRLDYLKVLVLDEADRMLDMGFADIISDVISYAPTHRQ
TLLFSATYAEPIRALSQKFQFKPVSVSVETSHHDNPIEQRFHQVDKAKRLNALGYLLAYH
RPESTVVFCNTKRDCQDVADTLTNCGFSVQALHGDLEQKDRDQVLVRFANKSCSILVATD
VAARGLDIKDMQAVINYELPWDPEVYVHRIGRTGRAGAKGLALSLVSEAELNRVKAIEEY
IAGSVKWDDIAPFKLSSEHRFEPPMVTLWIDGGRKDKMRPGDILGALTGANGITGGEVGK
IDIFDKHAYVAVKRGSADKALTCLRAGKIKGRNFNVRKSQWN
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
gtgaatacacccgaattttcgtccctgccgttaaaacccgccctactggaaaacatcgaa
tcgctgggttatacccacctgacaccgattcaggccgaaagcctgccgcatattctggag
ggtaaggacgtgatcgcccaagccaagacaggcagcggcaagacggcggcgtttggcatc
ggcttgttatcgcggctggatttgagcagctttaaggtacaagccatggtgatctgccct
acccgcgaattggccgatcaggtttgcaaggaaatcagacaactggcccgcttcacccaa
aatattaaagtcctggccttgtgcggcggcacgccgtttgcgccgcagcgcagttcgctg
gaacatggcgtgcatgtggtggtgggtacgccgggccgtttgcaggagcatctgcaaaaa
gccagtttgcgcctggattatttaaaagtgttggtgctggacgaagctgaccgcatgctg
gacatgggttttgccgacatcatctccgacgtgatttcctatgcgccgacgcaccggcaa
acgctattgttctccgcgacttacgccgagccgattcgcgccttaagccagaaatttcaa
ttcaagccggtctcggtcagcgtcgaaaccagccatcacgataatcctatcgaacaacgc
tttcatcaggtagacaaagccaagcgcctgaacgcgctaggttatttgctggcttaccat
cgcccggaatcgacggtggtgttttgcaataccaagcgcgactgccaggacgtggcggat
acattgaccaattgcggattttccgtacaggccttgcatggcgatctggaacaaaaagac
cgcgatcaagtgctggtgcgctttgccaataaaagttgctcgattctggttgccaccgat
gtcgccgcgcgcggcctggacatcaaggacatgcaggcggtgatcaattacgaattgcct
tgggacccggaagtgtacgtgcacagaattggccgcaccggccgagccggagcgaaaggc
ttggcgctgagtttggtcagcgaagcggagctgaatcgcgtcaaagccattgaagaatat
atcgcgggttccgtaaagtgggacgacatcgcgccgtttaaactcagcagcgagcaccgc
ttcgagccgcccatggtcacgctgtggatagacggcggccgcaaggacaaaatgcgacca
ggcgatattttgggcgcgctcaccggcgctaacggcataaccggcggcgaagtgggcaag
atagacatcttcgataaacatgcctatgttgccgtgaagcgcggcagtgcggataaggcc
ttgacctgtttgcgggccggcaaaatcaagggccgcaacttcaacgtgcgcaagtcgcaa
tggaattaa
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