Methylomonas denitrificans: JT25_022450
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Entry
JT25_022450 CDS
T04191
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JT25_022450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_022450
Enzymes [BR:
mdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JT25_022450
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JT25_022450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
SH3_13
AAA_22
UvrD-helicase
RecD_N
SLFN-g3_helicase
DEAD
nSTAND3
T2SSE
UvrD_C
AAA_28
PhoH
ResIII
AAA_16
AAA_18
TrwB_AAD_bind
HerA_C
Motif
Other DBs
NCBI-ProteinID:
AMK79210
UniProt:
A0A140E736
LinkDB
All DBs
Position
complement(4896792..4898771)
Genome browser
AA seq
659 aa
AA seq
DB search
MIRQAAVIGSMQHWIAKGWLSHLNRAFVGFLLELEPNAADAVLWAGALVSHQLDRGEVYL
DLEKLCEQPGMTLAIPADDAWAVEQDAATAELARLKVYSLEVWKTALAQSRLVSSGEGDT
PLVLADNRLYLRRYWRYEQALQTLIGLRLQATRESLPESLSERLQSLFPTNSESPDWQKI
ACVLALRARFAIITGGPGTGKTTTLTKLLALLIHLAQEDSENPKNLNILLAAPTGKAAAR
VSESIAKALDNLAVDESIKQSIPRKASTLHRLLGSRHDSRRFLHNRYNPIVADIVIVDEA
SMIDLEMMASLLEALPANTQLILLGDKDQLASVEAGSVMGDLCRGAEHAAYDPETLAWIA
NYAGERLKPAAVPGSAINQQTIMLRHSHRFDEHSGIGQLAKAVNQGDALRAEAILSDLEH
YPDLLPEPRADYFALRQQPAPDAANSLLRKLVTNTGRCTDDKPRSRPGYGYYLAQISGCR
PSTAEQYDEWAMRVLTAFDAFQVLSALRRGPWGVEGLNQRIEEWLFAKSKQAFWYEGRPV
MITRNDYNLGLMNGDIGIALRDSTDKLKVAFPCADPSSNQQIRWISPMRLPDVETAFAIT
VHKSQGSEFNHVALVLPETISPVLTRELIYTGITRAKEGFTLLESSGGVFSKAILTCRK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgattcggcaagcggcggtaatcggcagtatgcagcactggatagcgaaaggctggttg
agtcatttgaatcgcgccttcgtgggttttctgttggaactcgagccaaacgctgccgac
gcggtgctatgggcgggggccttggtcagccatcagctggatagaggcgaggtctatctg
gacttggaaaaactctgcgagcagccggggatgacgctggccattccggccgatgatgct
tgggcagtggagcaagatgcggctacggccgaattggcgcgcttaaaagtgtatagcctt
gaagtctggaaaacagcgcttgcgcaatcgaggctcgtgtcatcaggagaaggcgatacg
ccgctggttttggcggataaccgtttatatttacggcgttactggcgctacgaacaagcc
ttgcagactcttattgggctgcgattacaagctacgcgagaaagtttgccggagtcttta
tcggaacgattgcaaagtttgtttccaacgaactcggaaagccctgattggcaaaaaatc
gcttgtgtcctggctttgcgcgcgcgctttgccattatcaccggcgggccaggtaccggt
aaaaccacaacgttaaccaagctgttggctttattgatccatttagcgcaagaagatagt
gagaaccccaaaaatctgaatattttactggcggcgcccaccgggaaagctgcggccaga
gtcagcgaatcgattgccaaagcgctcgacaatctggctgtcgatgaaagcatcaaacaa
tctattcccagaaaagccagcactttgcaccgcttactgggcagccggcacgattcgcgg
cgctttctgcataatcgttacaatcccatcgtcgccgacatcgtgatcgtcgatgaggcg
tcgatgatcgatctggaaatgatggcgtcgctgttggaggccttaccggcaaacactcaa
ttgatcttattgggcgacaaggatcaattggcgtcggtcgaggccggttcggtgatgggg
gatttatgccgcggcgccgaacacgccgcttacgatccggaaaccctggcctggattgcc
aactatgccggagaacggcttaaaccagccgcagtgcctggttctgctatcaatcaacaa
acgatcatgttgcgtcacagccatcgtttcgatgagcacagcggcataggacaattagct
aaagcggtgaatcagggagatgcgttgcgggccgaggcgatcctgagcgacctggaacat
tacccggatttgctgcccgaacctcgggccgactattttgctttgcggcaacagccagcg
ccggatgccgccaatagcttgttaagaaagctggtgactaatacgggccggtgcaccgat
gacaagccacggtctcgccccggttacgggtattatttggcgcaaatcagcggttgccgg
ccaagcacagccgagcaatacgacgagtgggccatgcgagtgttgactgccttcgatgca
tttcaggtgttgtctgcgttgcgccgaggcccgtggggcgtggagggcttgaatcagcgc
attgaagagtggctgtttgcaaaatccaagcaggcgttctggtacgaaggccggccggtg
atgataactcgcaacgattacaatctggggctgatgaacggcgatattgggattgcgctg
cgagatagtacggacaaactgaaggtggcatttccctgtgccgatccgtcgagcaatcag
cagatccgctggatatcgccgatgcgtttgccggatgtggaaacggcgtttgccatcacc
gtgcataagtcgcaaggctcggagtttaatcacgtggccttggtcctgccggaaactatc
agtccggtgctcacgcgcgaattaatttataccggtatcacgcgcgcgaaggaaggtttt
acgttgctggaaagcagtggtggggttttttctaaagctattttgacatgccgtaaatag
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