Methylomonas denitrificans: JT25_022455
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Entry
JT25_022455 CDS
T04191
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JT25_022455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_022455
Enzymes [BR:
mdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JT25_022455
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JT25_022455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_30
AAA_11
MinC_N
Motif
Other DBs
NCBI-ProteinID:
AMK79211
UniProt:
A0A140E737
LinkDB
All DBs
Position
complement(4898768..4902457)
Genome browser
AA seq
1229 aa
AA seq
DB search
MTSAIPLNPIDFPLSGTRLIEASAGTGKTYTIAALYVRLILGDNPGSAEPSRYLLPPDIL
VVTFTEAATKELRERIRERLSQAARFFRQQLPTTDAFLQDIRDCYAEQDWPACARRLELA
ANWMDESAVYTIHSWCNRMLQQHAFDSGSLFRQEVNTDDTELLNEVVRDYWRSFYYEMSN
DADFPSLYAVFKHPDELLLAVRSLLGNAEPIPFSLADGQSIKELISAVASIRQSSLQELK
APWLNWLPEVRELLEAAIENKVLPAKNYNSANRRNWLDKIEAWSLDPLQDTLDIGKGFEN
LSPAGMAKLANPGQTSPDHPGFAAIGQLPARLAALPSLKVELIKHAVHWIRQRYDFEKQR
IARMTFDDMLNRLDTALQGQNGDRLAEVIRQQYPIALIDEFQDTDPVQYRIFSTLYATPA
AGDSACLMIGDPKQAIYSFRGADIYTYLKAHRDTQGRHYTLSTNYRSTQALVDAVNQVFL
QADRQDRGAFRFKTDQDNPLPFLPVKAQGRDDVWVVDNQAAPALTLWHWESEDAVGMPAY
RETLAEVTASEIVRLLNAADSGQAGFRSASGWQALQPGDIAILVRSGTEASAIRNALARR
RLRSVYLSERDSIFASAEAVDMLLWLNALAEPRNERKVRAALSSATFGWSYQALHELALD
EPGWELHLERFLVYQQRWQQDGILPALRQLINDYGLHTRLADDSEGERSITNLLHLAELL
QQASMQLEGEQALIRHLAEAIEAGGSQAGDDDGIIRLESDANLIKVVTIHKSKGLEYPLV
FLPFICSFREVGGRFNAYYRYHDENRYLQIDLHKQEHIKAISEEERLQEDLRLLYVAMTR
ARHACWLGIAPVKSGSNKDCQLEKSAMGALLNWRTKLPTSELASQLRELKGSCDAILISP
LPEIDDARYSPVLANDGCDEARVPLSKVASNWWIASYSALHIADQPTPAADQFRLLPELE
TAHDDKQNDEAEIAAAVSKPQSGVHGLPRGAAPGVLIHDLLEECAQLGFASVSANPALRQ
ELLQKRFTGGEWENKHTAIGSVLAHWLDMPLLEDSDLSLATLGINTYQAELEFLLGADTV
DTQELDRLVTRHTFGGQTRPDLLPGQVNGLLKGFIDLVFVHDKRYYVVDYKFNSLGNDET
AYTREALAAAMLAKRYDLQYSLYLLALHRLLKVRLGNAYHYDTHIGGGLYLFLRGAQAPT
AGRIFDKPPRILIESLDKLFAASIDGAYA
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcgccatcccgctcaaccccatcgactttccgttatcgggtacgcggctgatc
gaagccagcgccggtaccggcaaaacctataccatcgccgccttatatgtgcggttaatc
ctgggagacaatcccggtagtgctgaacccagccgatatttattgccgccggatattttg
gtggtgaccttcaccgaggctgccaccaaggaattacgcgagcggattcgcgaacgtttg
agtcaggctgcgcgattttttcgtcagcaattgccgactacggatgcgttcctacaagac
atccgtgactgttatgcagagcaagattggccggcatgcgcccgtcgtctggagttggcg
gccaactggatggacgaatcggcggtttacaccatccacagttggtgtaaccgcatgctg
caacaacatgctttcgatagcggcagcttgtttcggcaggaggtcaataccgacgatact
gaattattgaatgaggtggtcagggattattggcgtagtttttactatgaaatgtctaac
gacgccgattttccaagcttgtatgcagtgttcaagcacccggacgagttactgctggcg
gtgcgttcgctgcttggcaacgccgagccgataccgtttagcttggccgacggtcagtcc
attaaagaattgatttctgcggtggcgtccatcaggcagtcgtcgttacaagagttaaaa
gcgccttggctgaattggctgcctgaagtacgcgaactattggaggccgccatagaaaac
aaagtgctgcctgcgaaaaattacaactcggctaaccgtcgcaactggctggacaaaatc
gaggcctggagtctggatcccttgcaggacactctggacattggtaagggttttgagaat
ctgtcaccggcaggcatggctaaattagccaaccccggacagacgtcgccggatcatccc
ggttttgcggcaattggccaattgcccgcgcgactggcggcattgcccagtttaaaagtc
gagctgatcaagcatgccgtgcattggataagacagcgttacgattttgaaaaacagcgc
atcgcccggatgaccttcgacgatatgctgaatcgcctggatactgcgctgcaaggccaa
aacggcgacaggctggcggaggtgattcgccagcaatatcccatcgcgttgatagacgag
tttcaggataccgacccggtgcaataccggattttttccacactctatgcgacgccagcc
gccggcgattcggcttgtttgatgataggcgacccgaaacaggccatctactcgttccgc
ggcgcggatatttacacgtatctaaaagcacaccgcgatacccaaggccggcattacacc
ctgagcaccaattaccgctccactcaggcattggtcgatgcggtcaatcaggtatttttg
caagccgatcggcaagaccgcggtgcattccggtttaaaacggaccaagataatccgtta
ccctttttgccggtcaaggctcagggccgcgatgatgtatgggttgtcgataatcaagcc
gctccggcgctaacgctatggcattgggaaagcgaggatgcagtcggcatgccggcttat
cgggaaacgctggcggaggtaacggccagtgagatcgtcagattgctgaatgcggcggat
tcggggcaagccgggtttagatcggcatccggctggcaagcgttgcagcctggcgacatc
gccatcctggtccgcagcggtaccgaagcttcggcgatacgcaatgccttggcgcgccgg
cgcttgcgcagcgtctatctgtcggagcgcgattccatctttgccagcgccgaagcggtc
gacatgttgctttggttaaatgccttggccgagccgcgtaacgaacgtaaggtgagggcg
gcgttaagttccgcgaccttcggctggtcttaccaagccctgcatgaactggccttggac
gaacccggctgggaattgcatctggaacgctttttggtttatcaacaacgctggcaacag
gatggtattttgcccgcgctgcggcaattgattaacgattacggcttacatacgcgtctg
gcggacgacagcgaaggcgaacggtcgataaccaatctgctgcatcttgcggaattgttg
caacaagccagcatgcagctggaaggcgagcaagccctgatcaggcatctggccgaagcg
atagaggccggcggcagtcaggccggcgacgacgacggcatcatcaggctggaaagcgat
gccaatctgattaaagtcgtcaccattcataaatccaagggcctggaatacccgctggtg
tttttgccgtttatttgcagctttcgcgaagtgggtggtcgcttcaatgcctattatcgt
tatcacgacgagaacaggtatttgcaaatcgacttgcataaacaagaacacatcaaggcc
atcagcgaggaagaaaggcttcaagaagatttgcgtttgctgtatgtggcgatgacccgg
gcccgccatgcttgttggttggggattgcaccggtcaagtcgggcagtaacaaggattgc
caattggaaaaatcggcgatgggggcgttgctcaattggcggaccaaactgccgaccagc
gaattagcatcgcaactgcgtgagctgaaaggcagctgtgatgcgattcttataagccct
ttaccggaaattgatgatgcgcgctatagcccagtcttggcaaacgacggctgcgatgag
gcgcgcgttccgctcagcaaagtagccagcaattggtggatagccagttacagcgccttg
cacatcgcggaccaaccaacgcctgcggcagatcaatttcggctgctgccggagttggaa
accgcccatgacgataagcaaaacgacgaagccgaaattgctgcggcggttagcaaaccg
cagtccggtgtccacggtttgcccagaggtgccgctcccggcgtgttgattcacgacctg
cttgaggaatgcgcgcaattgggttttgccagcgtgtcggcaaatcctgccttaagacaa
gagttgcttcaaaagcgttttaccggcggcgaatgggaaaataaacacaccgccatcggt
tcggtcctggcgcactggttggacatgcctttgctggaagatagtgatcttagtttggct
acgctaggaatcaatacctatcaagccgaactggagtttttactgggtgccgacacggtc
gatacccaagagctggaccgcttggtcacccggcatacgtttggcggacaaacgcgtccc
gacttgctgcccggacaagtaaacgggctgttaaaaggttttatcgacttggtattcgtg
cacgataagcggtactacgtggtcgattataaattcaacagcttggggaacgatgagacg
gcttacacgcgggaggccttggcggcagcgatgttggctaaacgttacgacttgcaatac
agcctgtatttgttggccttacatcgcttgctgaaagtcaggctgggcaatgcttaccac
tacgatacgcacatcggcggcgggctgtatttattcttaagaggcgcccaagctccgacg
gcgggacgcatattcgataagccgccccggatattgatcgagagcttggacaagttgttt
gccgcgtcaatagatggagcttatgcatga
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