Methylomonas denitrificans: JT25_022460
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Entry
JT25_022460 CDS
T04191
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
mdn
Methylomonas denitrificans
Pathway
mdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JT25_022460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_022460
Enzymes [BR:
mdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JT25_022460
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JT25_022460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AMK79212
UniProt:
A0A140E738
LinkDB
All DBs
Position
complement(4902454..4905951)
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AA seq
1165 aa
AA seq
DB search
MPESGHAHSLDNGIAVIHSNQLEELRDVVEYWLRQHPLRPLENEIFLVQSNGMGHWLKQS
LAQNSSLGIAAAMKMQLPSLFIWSVYRAVLGEQIPIEQPLAKDPLIWRLYRLLPVLLKQP
GFETLASFLTDDSNCRKRHQLAEQLADLFDQYQVYRSDWVSDWAAGQDVLRNGHGESKPL
PSAQRWQAALWRAVLDDLGAESSPFASRAAVHAQFMARIDTLTARPASMPRRVVLFGLSS
LPQQSLEVLAKLGRFCQIVLFVHNPCQHYWADIIEDKELLKAERRRQSYKSGMSAALSDA
ELHLQAPPLLAAWGKQGRDYIRLLDHFDETQAYANWHWPDSKIDMFKDYGEAGQRSLLQH
LQHSILDLEPLPEQPVLLANADESMQFHIAHSPQREVEILHNQLLARFDNAQRHGNPLYP
RNIIVMVPDINTYAPHIHAVFGQIQSDDPRYIPYSLADQQQRGQNPLLLAVEALLNLPES
RFAVSEFLGLLEVPALRARFEIDETAIPKLHQWIEESGIRWGLNARQRTQRVNMPANLQA
NTWQFGLRRMLLGYAVGAGAPFDEIQPYEEIGGLDAQWLGGLAFLLETLEKYAELLGREY
APNRWQQILSELLDDFFQVSDERERKTRDTLTSSLANWFKYCEQAGLNSADLLPIQVVRE
AWLAGVDEPSLHQRFLSGRVNFCTLMPMRAIPFRLICLLGMNDGEYPRNQQAHSFDLMSE
RGHYRPGDRSRRQDDQYLFLEALLSAREQLYISWVGRSIRDNSERPPSVLISQLRDVLAQ
GWALADKPTLLEKITVAHPLQPFSEAYVRKNRDQRLFTYVREWFTPAEAQPFSARIASGL
DDKTYSLTLESLAQFLRAPVKSFCNQTLKFGFDGETVTSEDCEPFGIDSLQAYLFSDELL
RGLTAEHPEDTEDFLSRQQAAMMQKGQLPLGGFAQASFAAIAEPVKSAWERYRMLVSEWT
ESLEPHVLQLTPFVLAGGVTMQLAGDLSQLRRHGQQGQAGLLHLTAQTLLNKDKSIKYQN
LLLQWLQHLAVCADSLPVQTLVIGADTVIEMPVVEQDAAYQQLQNLVAAYHDGMQAPLPV
ACRTAFCWLAAHSESALEKAQARYDGDEWNAGEVHYDAYLARFFPNFASLFAFAADKDFA
YWADGLYRPMFMHIRELPGAGEASV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaatcaggtcacgcacattccctggataacggcatcgccgtgatccactccaac
caactggaagaactccgcgatgtggtcgagtactggctcaggcagcatccattgcggccc
ttggaaaacgagatttttttggtgcagagcaacggcatggggcattggttgaagcaaagt
ctggcgcaaaattcctcgctgggcatcgccgccgcgatgaaaatgcagttgccgtctttg
tttatctggagtgtttaccgggcggtattgggcgagcagattcccatcgagcaaccgtta
gccaaagacccgctgatctggcgtttatatcgattgctgccagttttgctgaaacaaccc
ggcttcgaaaccttggccagttttttgactgacgacagcaattgccgtaaacgccaccaa
cttgccgaacagttggcggatctgttcgatcaataccaggtgtatcgttccgattgggtg
tcggattgggcggcggggcaggatgtgctgcgcaacgggcatggcgagagcaaaccgctg
ccgagcgcgcaacgctggcaagccgccttgtggcgggcggtgctcgatgatttgggtgcc
gaatcctcgccgtttgccagtagggcggcggtgcatgcgcagttcatggccaggattgat
accttaacggctcgccccgccagcatgccgcgccgcgtcgtgttgttcggcctgtcttcc
ctaccgcagcaatcgctggaagtgctggctaaattgggccggttttgccagatcgtgttg
tttgtgcataacccttgtcagcattattgggccgacatcatcgaagacaaggaactgctg
aaagccgaacgccgccggcagtcgtacaaatcgggtatgagcgcggcattaagcgacgcg
gaattgcatttgcaggccccccctttactggctgcctggggcaagcaaggccgggattat
attcgtttgctggatcatttcgatgaaactcaggcctacgccaactggcattggccggac
agcaaaatcgatatgttcaaagactacggggaagcgggacagcgtagtttgctgcaacac
ctgcaacattctatcctggacctggagccgttacccgagcaacccgttttgctggcaaat
gccgacgagtcgatgcagtttcatatcgctcacagtccgcagcgcgaagtcgaaattttg
cacaatcaattgttggcgcgtttcgataatgcccaacgacacggtaatcctttgtatccg
cgcaatatcattgtgatggtgccggacatcaatacctacgcgccgcatatccacgcggta
ttcgggcaaattcaaagcgacgatccgcgttatattccctatagtctggccgatcagcaa
cagcgcggacaaaatccgctattgcttgcggtggaagccttgctgaatttaccggagtcg
cggtttgcggtcagcgaatttctgggtttgctggaagtgccggctttgcgggcgcgcttt
gagattgacgaaaccgcgatacccaaactgcatcagtggatcgaagaatccgggatacgc
tggggcttgaacgccaggcaacgcacgcaacgggtcaatatgcctgcgaatttgcaggcc
aatacctggcagtttgggttgagacgcatgttgctggggtacgcggtcggtgccggtgca
ccttttgatgagattcagccctacgaagaaatcggcggcctggacgcgcaatggctgggc
ggtctggcgtttctgttggaaaccctggaaaaatacgcagagctgttagggagggagtat
gcaccaaatagatggcagcaaatattgtcagagctgctggatgatttttttcaggtaagc
gacgagcgtgagcgaaaaacccgggataccctgacaagttcgctggctaactggttcaag
tattgcgaacaagccggtttaaacagtgcggatttactgcccatccaagtggtgcgcgag
gcctggctggcaggcgtcgacgaaccttccttgcatcaacgctttctcagcggccgggtg
aatttctgcaccttgatgccgatgcgcgccatcccgtttcggttgatttgcctgctgggc
atgaacgacggcgaatatccgcgcaaccagcaagcgcacagtttcgatttgatgagcgag
cgcggccattaccgcccaggcgaccgctcgcgccggcaagacgatcaatatctgtttctg
gaagcgttgctgtcggcgcgcgaacaactgtatatcagctgggtagggcgcagtatccgc
gataacagcgagcggccgccttcggtgctgatcagtcaattgcgcgatgtgctggcgcag
ggctgggcgcttgccgataagcccacgttgttggagaaaattaccgtcgcgcatcccttg
caaccgtttagcgaagcctatgttcggaaaaatcgcgatcagcggctttttacctatgtc
cgggaatggtttacacctgccgaagctcagccgttcagcgctcggatcgcgtccggtctg
gacgataaaacctactcgttgaccttggaatcgcttgcgcaatttttgcgcgcgccggta
aaaagtttttgcaatcaaacactaaagtttggcttcgatggcgaaacggtcaccagtgaa
gactgtgaaccgtttggaatcgatagtctgcaagcctatttatttagcgatgagttgctg
cggggtttaaccgcagagcatccggaagacacggaagacttcctgtcgcggcaacaagcc
gcgatgatgcagaaagggcaactgcccttgggcggtttcgcccaggcgagtttcgcggcc
atagccgagccggtcaagtcggcttgggagcgctatcggatgctggtgtcggagtggacc
gaatctttagaaccgcatgtgctgcagctcacgccttttgtattggccggcggcgttacg
atgcaattagccggcgatctcagtcaattgcgtcgccacggccagcaggggcaagccggt
ctgttgcatctgaccgcgcaaactctgctgaataaggataaatccatcaaataccaaaat
ctattgttgcagtggttacagcatttggcggtttgcgccgatagtttgccggtacagacc
ttggttatcggtgccgacacggtgattgaaatgccagttgtcgagcaagacgccgcttac
cagcagttgcaaaacctggttgccgcttatcacgacggcatgcaagcaccgttgccggtg
gcgtgccgaaccgcgttttgctggcttgccgcacactcggaaagtgcgctggaaaaagcg
caagcccgatatgacggcgacgaatggaatgccggagaagtccattacgatgcctatctt
gcccgcttctttcccaactttgccagcttgtttgcgtttgccgcagacaaggattttgca
tattgggcggatggcttgtatcggccgatgtttatgcatatccgggaattgcctggggca
ggggaggcgtcggtatga
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