Monodelphis domestica (gray short-tailed opossum): 100009906
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Entry
100009906 CDS
T01031
Symbol
VPS39
Name
(RefSeq) VPS39, HOPS complex subunit
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo04140
Autophagy - animal
mdo04142
Lysosome biogenesis
mdo04145
Phagocytosis
mdo04148
Efferocytosis
mdo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
100009906 (VPS39)
04142 Lysosome biogenesis
100009906 (VPS39)
04140 Autophagy - animal
100009906 (VPS39)
04148 Efferocytosis
100009906 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100009906 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mdo04131
]
100009906 (VPS39)
Membrane trafficking [BR:
mdo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100009906 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Lgl_C
AAA_RNF213_1
Motif
Other DBs
NCBI-GeneID:
100009906
NCBI-ProteinID:
XP_001362173
Ensembl:
ENSMODG00000017928
UniProt:
A0A5F8GXT9
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Position
1:complement(199597061..199664591)
Genome browser
AA seq
875 aa
AA seq
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MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILISLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSTKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGTCTQKCALNWTDIPISME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSDIVYVASNHFVWRLIPVSI
ATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTEYRKQLQYPNPLPVLSGPELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLVFSYSIWVLRDFPEDGLKIFTEDLPEVEALPRDRVLNFLIENFKSLAIPYLEHIIHTW
EETGSEFHNCLIQLYCEKVQGLMKEYLSSFPIDKTPVPAGNEEGELGEYRQKLLMFLEIS
SCYDPSQLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDRNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINEIRIFLEKVLEENAQKKRYNQILKNLLQAEFLRVQEERIFHQQVKCIITEEKL
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPTDT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgccttcgagccggtgccgatcctggagaagctgcctctgcagattgactgt
ctggcggcctgggaggaatggcttctcgttggaaccaaacaaggtcatcttctcctttac
aggattcggaaggatgttggttgcaacagatttgaagtaactctagaaaaatccaacaag
aacttctccaaaaagatccagcagatccatgtggtttcccagtttaagattctcatcagt
ttgttagaaaataatatttatgttcatgacctattgacatttcaacaaatcactacagtt
tcaaaggcaaagggggcttctctgtttacctgtgacctccagcacactgaaacaggtgag
gaagtactgaggatgtgtgtggctgtgaagaagaagctccagctatatttttggaaggac
agagaatttcatgaactgcaaggggactttagtgtaccagatgtgcccaagtccatggca
tggtgtgaaaattccatttgcgtgggtttcaagagagactactatctcataagggtggat
ggaaaagggtccaccaaagagctctttccaacagggaaacaactggaacccttggtagca
cctttggcagatggaaaagtagctgttggtcaggatgatctcaccgtggtactgaatgag
gagggcacctgtacacagaaatgtgccttgaattggacagatataccaatttcaatggag
caccagcctccatacatcattgcggtgttgcctcggtatgtggagatccggacatttgag
cctcggctgttagtgcagagcattgagctacagagaccccgcttcattacttccggaggt
tcagacatcgtctatgtggccagcaaccatttcgtttggcgacttattcctgtctctata
gcaacccaaatccagcagcttcttcaggataagcagttcgaactggccctacagttggcg
gaaatgaaagatgattcggacagtgagaagcgacagcagatccatcacattaagaacctg
tttgcttttaacctcttctgtcagaaacgttttgatgagtccatgcaagtctttgcaaaa
cttgggacagatcctactcatgtgatgggtttgtaccctgatctgctacccactgagtac
aggaagcagctgcagtatcccaacccattgccagtgctctctgggcctgaactagagaag
gctcatttggcccttattgattacttgactcagaaaagaagccaacttgtgaagaaactc
aatgactctgaccatcagtcgagcacctccccacttatggagggcacccccactatcaag
tccaagaagaaactcctgcagatcatagacaccacattgcttaagtgttacctccacaca
aacgtggccttggtggctccattactgcgcctcgagaacaatcattgccacattgaagaa
agtgagcatgtattgaagaaggctcataagtacagtgagctcatcattctttatgagaag
aaggggcttcatgagaaagctttgcaggtgctggtagaccaatctaagaaagccaactcc
cccttgaaaggccatgagaggacagtgcagtatcttcagcatctgggcacagagaattta
catttggtattctcttactctatctgggtgctgagagatttcccagaagatggactgaaa
atatttactgaagatctccctgaggtggaggctctgccacgggaccgggtgctgaacttc
ttaatagagaactttaaaagcctggctattccttatttggaacacatcattcatacctgg
gaagaaacaggatctgagttccacaattgcctcatccagctgtattgtgaaaaggtccaa
gggctaatgaaggaatacctcagctccttccctatagataaaactccagtccctgctggc
aatgaagagggggagctgggagaataccggcaaaagctcctcatgttcctggagatatct
agctgctatgatccaagccagctcatctgtgatttcccttttgatggtctcctggaggaa
agagctctccttttggggcgaatgggaaaacacgaacaagccctcttcatttatgtccac
atcctgaaggatacaaggatggctgaagagtactgccataaacactatgaccgaaacaaa
gatggcaacaaagatgtgtatctgtcgctgcttcggatgtatctgtctccacctagtgtt
cactgcctggggccaatcaagatggagctgctggagccccaagctaatctccaggctgcc
ctacaggtcctggaattacatcacagtaaactggacaccaccaaggccatcaatcttctt
ccagccaacactcagattaatgagatacgcatctttctggaaaaggtcctggaggaaaac
gcacaaaagaaacgttacaatcaaatcctcaaaaatcttcttcaggccgagttcctgagg
gtccaagaggagcgcattttccaccagcaagtgaagtgtatcatcacagaggagaaatta
tgtatggtgtgtaagaagaagatagggaacagtgcatttgccagatatcccaatggagtg
gttgtacactacttttgttccaaagaggtcaacccaactgacacctga
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