Monodelphis domestica (gray short-tailed opossum): 100010266
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Entry
100010266 CDS
T01031
Symbol
PRPF4
Name
(RefSeq) pre-mRNA processing factor 4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100010266 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdo03041
]
100010266 (PRPF4)
Spliceosome [BR:
mdo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100010266 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
100010266
NCBI-ProteinID:
XP_001362345
Ensembl:
ENSMODG00000004444
UniProt:
F6RSY7
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Position
1:complement(452781840..452799163)
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AA seq
523 aa
AA seq
DB search
MASSRASATATKTPSRTPEDTASPVVKKPHIYYGSLEEKEKERLARGESGMLGKEGIKAG
IEAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPI
TLFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGSSNLKTARL
WIANYSLPRAMKRLEEARLHKEIPETSRTSQKQELHKSLRSLNNFCSQIGDDRPISYCHF
SPNSKLLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTISLDKKDVNLASC
AADGSVKLWSLESDEPVADIEGHSVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL
HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGISFSPNG
YHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKVWTH
PGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcgagcttcggccacggcaaccaaaactcctagcaggactcctgaagac
actgcctcccctgtagtgaagaagcctcatatctattatggcagtttggaagagaaggag
aaagagcgccttgcaagaggggagtcggggatgttggggaaggaaggcattaaagctgga
attgaggccggaaatatcaacataacttctggggaagtctttgaaattgaagaacatatc
agtgaacgacaagcagaagtattggctgagtttgagcgaaggaagcgagcccggcaaatc
aatgtttccacggatgactctgaagtaaaggcttgtcttcgagccttgggtgaaccaatc
acactctttggagagggccctgctgaaaggagagaaagattgagaaatattctctctgtg
gttggcacagatgccttaaaaaaaaccaaaaaggatgatgaaaaatccaaaaaatccaaa
gaagagtatcagcaaacctggtaccatgaaggatccagcaacctgaagactgctaggctg
tggattgctaactattcactacctagggcaatgaagcgcttggaagaagcacggctccat
aaagagattccagagacatctaggacatcccagaagcaggaactgcacaaatctcttcgg
tctttgaataacttctgcagccagatcggagatgatcgacccatttcctattgtcatttc
agtcctaattccaaactactggccacagcttgttggagcggactgtgcaaactctggtct
gtccctgactgcaaccttctgcacaccctaagaggccataatactaatgtcggagcaatt
gttttccaccccaaatccactatttccttggacaagaaagatgtcaatctagcctcttgt
gctgctgatgggtctgtgaaactgtggagtctagaaagtgatgagcctgtggcagatatt
gaaggccattcagtacgtgtagcacgggtgatgtggcatccctcgggacgttttctgggc
accacctgctatgaccgttcatggcgcctgtgggacttggaggcccaggaagagattctg
caccaggaaggccatagcatgggtgtatatgacattgccttccaccaggatggctctttg
gctggcactgggggactggacgcatttggtcgtgtatgggacctacgtacaggacgatgc
atcatgttcctagagggccacctgaaggagatttatgggatcagcttctccccaaatgga
taccatatagcaactggcagtggagacaacacatgcaaagtgtgggatctgaggcagcgg
cgttgtgtctataccatccctgcccaccagaacttggtgactggagtcaagtttgagccc
attcatgggaatttcttgctcactggtgcctatgacaacacagccaaggtctggacacac
cctggttggtccccactgaagaccctggctggccatgaaggaaaagtgatgggcctggat
atttcctctgatggtcagctcatagccacctgttcctatgacagaaccttcaaactctgg
atggctgaatag
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