Monodelphis domestica (gray short-tailed opossum): 100012368
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Entry
100012368 CDS
T01031
Symbol
SPG11
Name
(RefSeq) spastic paraplegia 11 (autosomal recessive)
KO
K19026
spatacsin
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo05014
Amyotrophic lateral sclerosis
mdo05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100012368 (SPG11)
05022 Pathways of neurodegeneration - multiple diseases
100012368 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdo03400
]
100012368 (SPG11)
DNA repair and recombination proteins [BR:
mdo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
100012368 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
LNS2_PITM1-3
Motif
Other DBs
NCBI-GeneID:
100012368
NCBI-ProteinID:
XP_001366663
Ensembl:
ENSMODG00000017693
UniProt:
F7G5B1
LinkDB
All DBs
Position
1:complement(202597720..202684510)
Genome browser
AA seq
2446 aa
AA seq
DB search
MAAQEGAGSASHRGVPPAQAMERVLPILLVPVPPEARARLGPLAQLHREQEVLGSLTVAG
SLQLLSLAPGSRSGKGCSLAGPFRHFVWENSHTSDSPTNKPKFLTLSESNELCIHEFKMK
DGKCDIVTLCSCNGETLKKLIEDKSIRISSLSCLRILSFEKTSSLLLINQCIVLHIEFPG
RDAEIKILSCFTLALPPQALERITDSQLCRGFLFVLDSSGWVYIFNAVDGMYLAHVNLIL
HQADVCDEEQPAHVSSFSTLKVSQQLDVIVITSYSSSAIAVDLNVYFRQHPEHVLCERKL
ENLPIKGPEGVDEDDPANSAYNMKLTRFSFQIDRSWKTQLSELYNRTKKPKLEVVSCVPW
FQDLLHFDPSESSYQPVQEQIWTFIPQDLTHVQYSHEGKDHVRSDDLKKLWKVMSIGEQE
GMAELKCASVTGFTVIFTWLVESMGWTIILWDLETQNVHRVFLGKKCIPVDCSGNQQLCL
VLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNAWGRCSIPIHALEAGLENHQL
DTVDFFLKSKENLFNPSSTSSIPTQTAKLPSHLYLKNVKELIPALDLLCSAIRENNSETQ
SRHFSEQLLNLTLSFLNKQIRDVFVHTEELDEHMQNGVDILTTYIIELRTFMIKFPRKPA
DAINAYIGEDVPRINESEMWGKLSPEQVINNAILNNKIPEAQTFFRFTNHAAQNLEELIQ
IGLELVFDRLLKNNIREASVLLKNMGFNVKDQLHKICLYTTEKNIRDFLVGILKEENYFS
EEEKRTIDYVYQVEKLYAGPFKENSETQVLRSWRKEDNFSKHRSVLDFLKFSEKDEIHKQ
DHRIVLNWAQWWDCPTRESILLPKTSTEELKACSPQVLWMYITAHHDWLSIFSWIEELYT
QKDCVSPLQAKWPHLTVDIIDQNTCSNDFLRNEILDTLARNGIFLTSELEDFELLLIRLS
RIGGVMQDPLPVQDYTSQKGLDFHSCFILYCLEHGLQHLLYIYLDYYHLTPLNCPFLEKE
ELHETYPWFEFLIRCRQISSNQADPKLIFQASLANAQILIPSNQASVSSMLLEGHTLLAL
ATTVYASGGLSQVIQKEEGETSLKKVDPQLLKMALTPYPKLRVALFPQYTVPSILPHDVT
LYHLIQSLSPFDPTRLFGWQATNTLAIADTSSDLPHFSSPDLVNKYAVIERLNFAYYLRH
GRPSFAFGTFLVQELAKSKSPKQLIQQAGNEAYMLALSFFHMPSVGAACVCFLELLGIDS
LKLRVDMKVANIILSYKCRNEEAEYNCIRESLAEKLVKLANGKKAATEELLSLLEEGIWD
SIQQQGISRTSSESGHQWSLVVQFCRLHNVKLSMAYLRECARANDWLQFIVHSQLHNYPL
EEVKSSLCYFSSVLQDHLQLAFENLPSFPNSKEHDRQAHDRSLQSTQSSQEEASTDLFHI
LLQCPNEPDPWRYLLVKAMRLRAPILSILASCFQDASIVPCLSVWIITSVEDRIAAEATS
HIQGSIEDHEWDLEDLSLIWRMLLTRRKSRTLTRSFQLFLKDSALLLMMEVYELCILYKN
YKNAQAKLLELQKNLEIIETAYNTSPLAIPLPWLKYQVTLLWKLMLQQCKTQYELRKLLQ
LFSEIDHLSDGPDVKKLCMLSQILKDTSIAISHFIITNYSTENFQQECRSILEKLQTEGQ
FALARKVAGLAELSVDSLVIEEIIQEMKTLKHIGQWHLKQARIEFWKKCHENFKKNTILK
RIASDFFLAQAIVTSESSADAKWCNIMERHLLLTLAGHWLAQEDPVPLGKLEELEKQIWL
CRITQHIHCSDQEVAESRLSRQISTSGELSFDSLSTDFSFSKLAALNASKYLEINGFPSR
EASERRLDKNEAESLNFLIGRLLDDGSVHEASRVCHYFHFYNQDVFLVLHCRALASGEAS
IDDLHPEIQAVLQNAELLEEKEENEEERARPSIRRFQSTSSLDCQSFVIVPRGDEVTAHL
ETLISRCLHGKNYCQQVVCLYELAKELGCTYGEISAQDSDAVLRAILSSQQPDRCKRAQA
FITTQGLKADRVADLVAEEVMQELLASKAGKGQKQAASPAEEGLMFLQLTALCQDQTLVG
MKLLDKISSVPPGELSCTTELLILAHQCFTLTCHMEGIIRVLQAARLLTDNHLAPNDEYG
LVVRLLTGIGRYNEMTYIFDLLHRKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEK
HNMIALCFSMCREIGENHEAAARTQLKLIESQPWEECIQDGPQLKQLLLKALTLLLDAAE
SYAKDSCVRQALHCHRLTKLITLQIHFLNSGQNTMLINLSRQNLTDCIMALPRFYQASIV
AEAYDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLKTNIFEEISKKFKQCQPTETVKRN
MKKLLSYCEDVYLHYKLAYDHKFYDVVKKLLKEPQTGCCLNDMLAN
NT seq
7341 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaagagggggccggaagtgcatcccaccgcggcgttccgccggcccaagct
atggagcgggtgctgcctatcttgttggtgccagttccccccgaggccagagcaaggctc
gggcccttggcccagttgcaccgggaacaagaagtgctgggcagcctcacggtcgcgggc
agcctccagctgctgtcactggctcctggcagccgcagcgggaaaggctgcagccttgca
ggccccttccggcactttgtatgggagaattcccacaccagtgactcaccaacaaacaag
cctaaatttctgaccctcagtgagagtaatgaactgtgtatccatgagttcaagatgaag
gatggaaaatgtgatatagtcacattgtgtagctgcaatggggagaccttaaaaaagcta
attgaagacaaaagtattagaatttcttccttatcatgtctgagaattctgtcctttgaa
aaaacttcatcattgctgctcatcaaccaatgtattgttttacacatcgaatttcctgga
agagatgctgagatcaaaatcctgagctgcttcactctggccttacctccacaggctttg
gaaaggataactgattcacagctttgcagagggtttctttttgttttggatagttctggc
tgggtctacatttttaatgctgtagatggcatgtaccttgcccatgtgaatctaatcctt
caccaagctgatgtatgtgatgaggagcagccagcccacgtgtcttcattttccactctg
aaagtgtcccagcagctagatgtgattgtgattaccagctactccagctctgcaattgct
gttgacttaaatgtctatttcaggcaacatccagaacatgtactgtgtgagagaaagcta
gaaaatcttcccatcaaaggacctgaaggagtggatgaagatgatcctgccaactctgcc
tacaacatgaaactgaccaggttttcattccagattgatagatcctggaaaactcagctg
tcagaattgtacaacagaacaaagaagcccaagttagaagttgtgagttgtgtaccttgg
ttccaggaccttcttcattttgacccttctgaatcaagttaccaacctgtacaggagcag
atttggacctttattccacaagacctaactcatgtccagtatagccatgaagggaaagat
catgttaggtcagatgatttaaagaagttgtggaaggtaatgtccattggagagcaagag
ggaatggcagagctcaagtgtgcgtctgtgacaggattcactgtgatttttacgtggtta
gtagaaagtatgggctggacaattattctgtgggacttggagacacagaatgtacaccgt
gtttttcttggcaaaaaatgcattcctgtggactgcagtggaaaccagcaattgtgcctt
gttctgacagaaaatggactttctttgattttgtttggtttgactcaagaagaattcttg
aatagactaatgatccatggaagtgccagcactgttgattccctttgtcatctcaatgct
tgggggagatgctcaatccctatccatgcattagaggctgggttagagaaccatcagttg
gataccgtagacttctttttgaagagcaaggagaatctttttaatccctcttccacctct
tctatacccacacagactgccaagcttccatcccatttatatttgaaaaatgttaaggaa
ctgataccagcattggatttgctttgttcagctatccgagaaaataattctgaaactcag
agcagacacttttcagagcaactgctgaaccttacattatctttcctcaacaaacaaatc
agggacgtctttgttcacactgaagaattagatgaacacatgcagaatggtgtggatatt
ttgaccacctatattattgaacttcgaaccttcatgataaaatttcctcggaaaccagct
gatgccataaatgcatatatcggtgaggatgtccccagaataaatgagagtgaaatgtgg
ggaaagctcagccctgagcaagtcatcaacaatgccattttgaacaacaaaataccagag
gctcagaccttcttcaggtttaccaaccatgctgctcaaaaccttgaagaactgattcaa
ataggattagagctagtctttgacaggctactaaagaacaatatcagagaagcttcagta
ctcttaaagaacatgggcttcaacgtaaaggaccagttacacaaaatatgtttgtataca
actgagaaaaacatccgggactttttggttggcatcttgaaagaagaaaattatttttct
gaagaagaaaagagaactatagactatgtatatcaggttgaaaaattgtatgcaggaccc
ttcaaagagaactcagagacccaggtcctcaggagctggagaaaggaagacaatttttcc
aagcacagatctgttttagacttcttgaaattcagtgaaaaagatgaaattcataagcaa
gatcatagaattgtactaaactgggctcagtggtgggattgtccaacacgagaaagcatc
cttcttcctaagacatctacagaagaactcaaggcctgttctcctcaagttctttggatg
tatataacagctcatcatgactggttaagcattttttcatggattgaagaattgtatacc
cagaaggattgtgtttcacctctgcaggctaaatggccccatctgacagtagatattatt
gatcagaatacatgcagcaatgattttcttaggaatgaaatactggacacactggccaga
aatggaattttcctaacatctgaactagaagactttgaactcttgctcataagattgagc
cgtattggaggtgtgatgcaggacccacttcctgttcaagactatacttcccagaagggt
ttggatttccattcttgctttattctatattgcttagagcatggcctgcagcatctgctc
tacatctaccttgattattatcaccttactcctttgaattgtccctttttggagaaagaa
gaattacatgaaacttacccttggtttgaatttttgattcgatgtcgacagatttccagt
aatcaagcagatcccaaactgatttttcaggcgagtcttgctaatgctcaaatactgatt
cccagtaaccaagccagtgtgagcagtatgctcttggaaggacataccctcttggccctt
gccacaacagtatacgcttctggaggccttagccaggtcattcaaaaagaagaaggggaa
acctctttgaagaaggtggatccccagctcctaaaaatggccttaactccttaccctaag
cttagagttgctctctttccacagtacacggtccctagtatcctgccccatgatgttaca
ctctaccatcttattcagtccttgtctccctttgatcccaccaggctgtttggctggcag
gccaccaatactcttgccattgcagatacctcaagtgatcttcctcatttctccagccct
gacctggtaaacaaatatgctgtaatagaacgtctgaattttgcttattatttacgtcat
ggacgaccatcatttgcatttggtacttttcttgttcaggaattagccaagagcaagtct
ccaaagcaactgatccagcaagcaggaaatgaagcctacatgttggcactatccttcttt
catatgccttcagtgggggctgcttgtgtatgtttcttggaattgcttggtattgacagc
ctcaagcttagagttgatatgaaagtggccaacatcattttgagctataagtgtagaaat
gaagaggctgagtacaactgcatcagagaatccttagctgaaaaattagttaaactggct
aatggtaaaaaagcagcaactgaagaattgcttagtctcttagaagaaggcatttgggat
agtattcaacaacaaggaatatcaaggacctccagtgagtcaggccaccagtggtcactg
gtggtgcagttctgtaggcttcataatgtgaagctgagcatggcttatctcagagagtgt
gctagagccaatgactggctacaattcattgttcacagccagctccacaactaccccctg
gaggaagtcaagtcctccctctgttactttagctcagtcctgcaggaccatttgcaactg
gcctttgaaaatttgccttcatttccaaattccaaagaacatgatagacaggctcatgac
agatccctccagagcactcaaagtagccaagaggaggcctctactgatttatttcatatt
ctgcttcaatgtcctaatgaaccagatccttggcgttaccttctggttaaagccatgaga
ctacgggcccccatcctgagcatcttggcttcttgtttccaggatgccagcattgttcct
tgtctgagtgtgtggatcatcacttctgtagaggatcgtattgctgctgaagcaacaagt
cacattcagggctcaatagaagaccacgaatgggatctagaggacctttcactcatctgg
aggatgttattaacaagaagaaaaagcagaactcttactagaagcttccaactttttcta
aaggattctgctttgctgttgatgatggaggtgtatgaactgtgtatactctacaagaat
tataagaacgcccaagccaaactgctagaactccagaagaatcttgaaattattgaaaca
gcatataatacatcccctcttgccattcctttgccatggctgaaatatcaagtcaccctt
ctttggaagcttatgttgcagcagtgcaagacccaatatgaactacgaaaactcttacag
ctgttttctgaaatagaccatctttctgacggtccagatgtgaagaagctgtgtatgctc
agccagattttgaaggacacatccatagctattagtcattttatcataaccaattatagc
actgagaactttcaacaggaatgcagatccattttggaaaagcttcagacagaaggacag
tttgccctggcaaggaaggtagcaggattggctgaattatctgtggacagcttggttatt
gaagagataattcaggagatgaagaccctaaaacatattggtcagtggcacctgaaacaa
gcaagaattgaattctggaaaaaatgtcatgagaattttaagaagaacaccattttgaaa
agaatagcatctgacttttttttagcccaggctattgtgacatctgaatcctcagctgat
gcaaaatggtgcaacattatggaaagacatttgctacttaccctggcaggacattggctt
gcccaggaagaccctgtgcccttaggaaagctagaagagctggagaagcaaatatggctt
tgtcgtatcacccagcacatccactgtagtgaccaagaggtggctgaatcaagactttct
cgacagatttctaccagtggtgaactttcctttgatagtttatccactgacttttctttc
tccaaattagctgccctgaatgcctcaaagtacttagagattaatggctttccctctaga
gaagcttctgagagaagactggataagaatgaggcagagtcattaaactttctgattggg
cgtctattagatgatggctctgtgcatgaagcaagcagagtttgccactattttcatttc
tataatcaagatgttttcttggtgttacactgtagagcactggcctcaggagaagctagt
atagatgatttgcacccagagatccaggctgtccttcaaaatgccgagctgttggaggag
aaagaggagaacgaggaggaacgagcaagaccttcaattaggagatttcagagcacctcc
agtctggattgtcagtcctttgttattgtgccacgtggtgatgaagtcacagcccatctg
gagactttgataagcagatgtcttcatgggaagaactactgccagcaagtggtttgtctg
tatgaacttgccaaggagctgggctgcacttacggggaaatctccgctcaggacagtgat
gctgtgctccgtgctatcctgtcctcccagcagcctgaccgctgtaagcgagcccaggct
ttcattactacccaaggcctgaaggcggacagggtggccgaccttgtggctgaagaggtg
atgcaggagctgctggcctccaaagcaggaaaaggacaaaagcaggcagccagtccagca
gaggaaggcctaatgttcctccagctgactgctctgtgccaggatcaaacgctggttggc
atgaagctgctagataagatttcctccgttccccctggggaactgtcctgtaccacagag
ctcctgatcctggcccatcagtgtttcactctgacatgtcacatggagggcatcatccgg
gtgttgcaggctgcgcggctgctcactgataaccatttagcccccaacgatgagtatgga
ctggtggtacgcctcctgacgggcatcggcaggtacaatgagatgacctacatatttgat
ttgctacaccgaaaacactacttcgaagtgttgatgaggaagaagttggacccgagcggg
accctaaagacggcactgctggactacatcaagcgctgccgccctggagacagtgagaag
cacaacatgattgctctgtgcttcagcatgtgtcgggagattggggagaaccatgaggcg
gctgcccgcacccagctcaagctcatcgagtctcagccctgggaggaatgcatccaggac
gggccccagctgaaacagctgctgctgaaagccctgacactgctattggatgcagcggag
agttatgctaaggattcctgcgtgcgccaggctctgcactgtcaccggcttaccaagctg
ataacactacagatccattttctgaattctggccagaacacgatgctcatcaatcttagc
aggcagaacctgacagactgcatcatggccctgcctcggttctatcaggcctctatcgtc
gctgaggcctatgactttgtcccagattgggctgaaattctctatcaacaagtgattctc
aaaggtgacttcaattacctggaagaatttaagcaacaaaggttattaaaaaccaatata
tttgaagagatttccaagaaatttaagcaatgccagccaactgagacagtcaaaagaaac
atgaaaaagttactgtcgtactgcgaagatgtctacctgcattataagctggcatatgat
cacaagttttatgatgtcgtaaaaaagcttcttaaggagccccagactggatgctgtctg
aatgacatgttggcaaattag
DBGET
integrated database retrieval system
