Monodelphis domestica (gray short-tailed opossum): 100012828
Help
Entry
100012828 CDS
T01031
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03013
Nucleocytoplasmic transport
mdo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100012828 (UPF1)
03015 mRNA surveillance pathway
100012828 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100012828 (UPF1)
Enzymes [BR:
mdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100012828 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100012828 (UPF1)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100012828 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100012828 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100012828
NCBI-ProteinID:
XP_003340788
Ensembl:
ENSMODG00000003689
LinkDB
All DBs
Position
3:452203149..452273278
Genome browser
AA seq
1122 aa
AA seq
DB search
MSVEAYGLSSQTLTFLDTEEAELLGADXQGSEFEFTDFTLPSQTQTPPGGPGGGGGGGGS
GAGGPGAAGVGGTAGQLDAQVNGPDGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTK
DLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPL
GETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDR
CFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRY
EDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRL
MQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWK
STSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQV
YAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ
TGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYR
ALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQ
LILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIF
YEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKI
TTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDF
IILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQK
VLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPS
NMYFQTHDQIGMISTGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTG
RGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPE
LSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggctcagctcgcagacgctcaccttcctggacacggaggag
gccgagctgctgggcgccgacnttcagggatccgagttcgagttcaccgacttcaccctc
cccagccagacccagacgccccccgggggccccggtggcggcggaggcggcgggggcagc
ggcgcgggcgggcccggagccgcgggcgtcgggggaaccgcgggccaactcgacgcgcag
gttaatggacctgatggtatcctgcagaacggtgctgtggatgacagtgtagctaaaacc
agccaactgttggccgaattgaattttgaggaagatgaagaagatacttactatacaaag
gatctccctgtgcatgcttgcagttactgtggcatccatgacccggcttgtgtggtttac
tgcaatactagcaagaaatggttttgtaatggacgaggaaacacttctggcagccatatt
gtaaatcatcttgtaagagcaaaatgcaaagaggttactctccacaaggatgggcccctg
ggggagacagtgctggagtgttataactgtgggtgtcggaatgtgtttctccttggcttc
atacctgccaaagctgactcagtagtggtactcctctgcaggcaaccctgcgccagtcag
agcagcttaaaggatatcaattgggacagctcacagtggcagcctctgatccaagatcgc
tgctttctttcctggttggtaaagattccatctgagcaggaacaactgagagcacgccag
attacagcccaacaaattaacaaactagaggaactttggaaggaaaatccttcagcaaca
ctcgaagatctagaaaagccaggtgttgatgaggaacctcagcatgtcctgctgcggtat
gaggatgcttaccagtatcaaaatatattcggcccacttgtcaaactcgaagcagattat
gataagaaacttaaagaatcccagactcaagataacatcacagtcagatgggacctgggc
ctcaacaagaagagaatcgcttatttcaccttgcccaagactgactctgatatgcgtctt
atgcagggagatgaaatctgccttcgctataaaggtgacctcgcacctctgtggaaggga
atcggccatgtcattaaagtcccagataattatggtgatgaaattgcaattgaattgagg
agtagtgtcggggcccctgtagaagttactcataacttccaagtggattttgtatggaag
tccacttcatttgacagaatgcagagtgcattaaaaacatttgctgtagatgaaacctca
gtatctggctacatttaccacaaattgttgggtcatgaagtagaggatgtgattattaaa
tgccaactgccaaaacgttttacagcacaaggactccctgacctcaatcattctcaggta
tatgcagtaaagactgttttgcaacgacctttgagcctcatccagggaccacctggtaca
gggaagactgtaacatcagctacaattgtctaccatttggctaggcaaggcaatgggcct
gtgctagtttgtgctccaagcaatatagctgtggatcagttaactgagaagattcatcaa
actggtttgaaagttgttcgtctttgcgctaaaagccgagaagcaattgattctcctgta
tcttttttggctctgcacaaccagatcaggaacatggatagcatgcctgaactccagaaa
ttacaacaattgaaagatgaaacaggcgaactttcatctgctgatgaaaagcgttatcga
gcattgaaacgtactgctgaacgagaattgcttatgaatgcagatgtgatttgctgcacg
tgtgtgggagcaggtgatccaaggcttgccaagatgcagttccgatccattttaattgat
gaaagcacacaggctactgaaccagagtgtatggtaccagttgttcttggagccaaacag
ttgatcctcgtaggagatcattgccagctgggtcctgtggtcatgtgcaagaaagctgca
aaagcaggcttgtctcagtcgctgtttgagcggctagtggtattaggaatccgtccaatc
cgcctgcaagtgcagtatcgaatgcaccctgcccttagtgctttcccatcaaacatcttc
tatgaggggtcccttcagaatggtgttactgcagctgatcgtgtaaaaaagggatttgat
ttccagtggccccagccagataaaccaatgttcttctatgtgacccagggccaagaagaa
attgccagttcaggcacctcttatttgaacagaaccgaagcagcaaatgtggaaaagata
actacaaagctactaaaagctggtgccaagccagatcaaattggtattattacaccttat
gaaggtcagcgatcttatctggtacaatacatgcaatttagtggctccctgcatacaaaa
ctctaccaggaagtggaaatagctagtgttgatgcattccagggacgagagaaggacttt
atcatactctcctgtgtgagagccaatgagcaccaaggaattggatttttaaatgatccc
aggcgtcttaatgtggctcttactcgagctagatatggagtaattattgttggcaaccca
aaagctctctccaagcaaccactttggaatcatctattgaactactacaaggaacaaaaa
gtactggtagaaggacccctgaacaacctccgagaaagcctcatgcaattcagcaagccc
cggaaacttgtcaataccatcaaccctggagcccggttcatgactacagccatgtatgat
gcacgtgaagctatcatcccaggatctgtctatgataggagcagtcaaggacgtccatcg
aacatgtattttcaaactcacgatcagattgggatgattagcactggacccagtcatgtc
actgctatgaacattcctattcctttcaaccttgtgatgccaccaatgccaccaccaggc
tatttcggccaagccaatggaccagctgcaggccgtgggacaccaaaggggaaaactggt
cgtgggggacgccagaaaaatcgctttgggatacctggaactagccagtcgaatcttcca
aatagtcaggccagtcaagatgtggtatcccagcccttctcccagggtcctttgactcag
ggctatatttccatgagtcagccatcacagatgagccagccagggctctcccaaccagaa
ttatcccaggacagttaccttggtgatgagtttaaatcgcagattgatgtggctctgtca
caagactctacataccaaggagaacgggcataccaacacggtggagtgacagggctgtca
cagtattag
DBGET
integrated database retrieval system
