Monodelphis domestica (gray short-tailed opossum): 100013371
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Entry
100013371 CDS
T01031
Symbol
UPF2
Name
(RefSeq) UPF2 regulator of nonsense transcripts homolog (yeast)
KO
K14327
regulator of nonsense transcripts 2
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03013
Nucleocytoplasmic transport
mdo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100013371 (UPF2)
03015 mRNA surveillance pathway
100013371 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100013371 (UPF2)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100013371 (UPF2)
mRNA cycle factors
P-body specific factors
100013371 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100013371
NCBI-ProteinID:
XP_007504016
Ensembl:
ENSMODG00000016794
UniProt:
F7G5X8
LinkDB
All DBs
Position
8:complement(135724304..135907097)
Genome browser
AA seq
1271 aa
AA seq
DB search
MPAERKKPASMEEKESLLNNKEKECSERRPVNSREKPKDDVKLSTKREVVKVPEEKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKRREEEEKKKLEEEERKKQEEQVKRQQEEAAAQL
KEKEESHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKGAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNERTYQSKDSNKEDSKESKEPKDNKDVSNTDDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDPEVKEYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGTPSPMDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKNLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLMNDKDSKD
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDDGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGETEAGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacaac
aaagaaaaggagtgcagtgaaagacgaccagtaaatagcagggaaaaaccaaaagatgat
gtcaagcttagcaccaagagagaggtagttaaagtgcctgaggagaagaagaaaaaattg
gaggaagacaaacgaaaaaaagaggacaaggagcgaaagaaaaaagaggaagagaaggtg
aaagctgaggaagaactaaagagacgagaagaagaagaaaagaagaagcttgaagaggaa
gagagaaagaagcaagaagaacaggtgaaacgtcagcaagaagaagcagctgctcaactg
aaagagaaagaagaatcccatcagcttcatcaggaagcctgggaacgacatcaagcaaga
aaggaactccgaagcaaaaaccaaaatgcaccagacaaccgaccagaggagaatttcttt
agcagattggactcaagtttgaagaaaaacacagcttttgtcaagaaattgaaaactatt
acggagcaacagagagactccttgtcccatgattttaatggcctcaatttaagcaaatat
attgcagaagctgttgcttctattgtggaagctaagctaaaaatatctgatgtgaactgt
gctgtgcacttgtgctctctctttcaccagcgctatgctgactttgccccatctttgctt
caggtttggaaaaaacattttgaagcaagaaaagaggagaaaactcctaacattaccaaa
ctaagaactgacttgcgtttcattgcagaactgaccatagtggggattttcactgacaaa
gaaggtctgtccttaatctatgaacagctgaaaaacattattaatgctgaccgtgaatcc
cacactcacgtgtctgtggtgattagcttttgccggcattgtggggatgatattgctgga
ttggtaccaaggaaagtgaaaggtgctgcagagaagtttaacttgagttttcctcctagt
gaaataatcagcccagagaagcaacagcctttccagaacctgttaaaagaatattttaca
tctttgaccaaacacctgaaaagggaccacagggagctacagaatattgagagacaaaac
agacgcattctacattctaaaggggagctgagtgaagatcgacataagcagtatgaagaa
tttgctatgtcttatcagaaattgctggcaaattctcagtctttagcagaccttttggat
gaaaatatgcctgatcttcctcaggataaaccaacaccagaagaacatgggcctggaatt
gatatctttacacctggtaaacctggagaatatgacttagaaggtggtatttgggaggat
gaagatgctcgaaatttttatgagaaccttattgatttgaaggcttttgttccagccatt
ttgtttaaagacaatgaaagaacatatcagagcaaagactctaataaagaagattccaaa
gagtcaaaggaacctaaggataataaagatgtgtcaaatacagatgatttggaacttgag
ttggagaacctggaaattaatgatgatactttggaattagagggtggtgatgaagcagaa
gaccttacaaagaaacttcttgatgaacaagaacaagaagatgaggaagccagtactggg
tctcatctaaagcttatagtagatgctttcctgcaacagttgccgaattgtgttaatcga
gatctcatagacaaggcagcaatggatttttgcatgaatatgaacacaaaagcaaataga
aggaagttggtccgagcactcttcatagtacctagacagagattggatttgttaccattt
tatgcaagattggttgctactttacatccttgcatgtcagatgttgcagaggatctttgt
tcaatgctgaagggagatttcagatttcatgtacgaaaaaaggaccagatcaatattgaa
acaaagaacaaaaccgttcgatttattggagagttaacaaaatttaaaatgttcactaaa
aatgatacacttcattgcttaaagatgcttttgtcagacttctcccaccaccatattgaa
atggcatgcacactgttggaaacttgtggaaggtttcttttcagatctcctgagtctcac
ctaagaactagtgttcttttggaacaaatgatgagaaagaaacaagcaatgcatcttgat
gcaagatatgtcacaatggtcgagaatgcatattactactgcaaccctcctccagctgaa
aaaactgtgaagaagaagcgccctcctctccaggaatatattcgtaagctcctttacaag
gacctttctaaagttactactgagaaggtactaagacagatgcgaaagctgccttggcag
gatccagaagtgaaagaatatgttatttgttgtatgataaacatctggaatgtgaaatat
aatagtattcattgtgtagccaacctcttagcaggattagtactataccaggaagatgtt
ggaattcacgttgtggatggagttttagaagatattcgactaggaatggaggttaaccag
cctaagtttaaccagagacggatcagcagtgccaagttcttgggggaactttataattac
cgaatggtggaatcagcagttatttttagaactctctattcttttacatcatttggtgtt
aatcctgatggtactccaagtccaatggaccctcctgaacatctcttcagaattaggcta
gtatgcactattctggatacctgtggtcagtactttgacagaggctccagcaaacgaaag
cttgattgtttcctcgtttattttcagcgatatgtttggtggaagaaaaatttggaggtt
tggacaaaagaccatccttttcctattgacatagattatatgatcagtgatacgttagaa
ttgttaagaccaaagatcaaactttgtaattctctggaagagtccatcaggcaagtacaa
gacttggaacgagaattcttaataaaactaggccttatgaatgacaaagattcaaaagat
tctatgacagaaggagagaaccttgaggaagatgaagaggaagaagaaggaggagctgag
acagaagaacaatctggaaatgaaagtgaagtaaatgaacctgaggaagaggagggttct
gacaatgatgatgatgatggagaggaagaagaggaggagaatacagattaccttacagat
tccaataaggaaaatgaaactgatgaagagaacactgaggtaatgattaaaggaggtgga
cttaagcatgtcccatgtgcagaggatgaggacttcattcaggctctggataaaatgatg
ctggaaaatcttcagcaacgaagtggtgagtctgttaaagtacaccagctggatgttgct
atcccacttcatctcaaaagccagctgaggaagggcccaccactgggtggtggggaagga
gagactgaggctggagacacaatgccgtttgtcatgttaactagaaaaggcaacaagcag
cagtttaagatccttaatgtaccaatgtcttcccaacttgctgcaaatcattggaaccaa
caacaagcagagcaagaagagagaatgagaatgaaaaaactcacattggatatcaatgaa
cgtcaggaacaagaagattatcaagaaatgttgcagtctcttgcacaacgtccagctcca
gcaaacaccaatcgtgagcgacggccccgttaccagcatccaaagggagcacctaatgca
gatctaatctttaagactggtgggaggagacgttga
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