Monodelphis domestica (gray short-tailed opossum): 100013672
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Entry
100013672 CDS
T01031
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03008
Ribosome biogenesis in eukaryotes
mdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100013672 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
100013672 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100013672 (XRN1)
03009 Ribosome biogenesis [BR:
mdo03009
]
100013672 (XRN1)
03016 Transfer RNA biogenesis [BR:
mdo03016
]
100013672 (XRN1)
03036 Chromosome and associated proteins [BR:
mdo03036
]
100013672 (XRN1)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100013672 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
100013672 (XRN1)
Ribosome biogenesis [BR:
mdo03009
]
Eukaryotic type
Pre-60S particles
RNases
100013672 (XRN1)
Transfer RNA biogenesis [BR:
mdo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100013672 (XRN1)
Chromosome and associated proteins [BR:
mdo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100013672 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
100013672
NCBI-ProteinID:
XP_007502162
Ensembl:
ENSMODG00000021236
LinkDB
All DBs
Position
7:217640612..217735170
Genome browser
AA seq
1793 aa
AA seq
DB search
MVWAGGACVVIGGATAEAAAEARAGGLVSVWRRLQVGSATVDMGVPKFYRWISERYPCLS
EVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPR
KVFFMAVDGVAPRAKMNQQRGRRFRAAKEAEDKIKKALEKGEILPSEARFDSNCITPGTE
FMARLHEHLKYFVNMKISSDKSWQGVTIYLSGHETPGEGEHKIMEFIRSEKGKPDHDPNI
RHCLYGLDADLIMLGLTSHESHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYI
DYEFSALKDKISFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYRTYMTVL
PELGGYINENGHLNLPRFEKYLIKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGIAA
EEAKNYKQKKLKGQENSMCLAALDKTKEEVMTSKSVIEDEPEDDDLFETEFRQYKRTYYM
TKMGVEIVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLSDIRNISELK
IQFELGKPFMPFEQLLAVLPAASKDLLPGCYQHLMTSEESPIIEYYPPDFKTDLNGKQQE
WEAVVLIPFIDETRLLQAMESCHKYLREEEEKRNRHSECLMYWFDGDSGFKYLSPWPERF
PPIEKCHARHKIISLDAWHVDINQNKITKVDQKALYFCGFPTLKHIKHKFFLKKSGVQVF
QQSSRGENMMLEILVDDDSDELQIENVASSVLGKSVFVNWPHLEEARIVAVSDGETKFYL
EETQGTQKLYLGKTAPPTKVVHVGDKEQSNWVKEVQTISEHYQRRKGIIINETSVVVYAQ
LLTGHKYQLNQNGEVHLEKQWSKQVLPFVYQTIVKDISAFETHFSNIKTLDDLFPPRSTV
FMLGTPYYGCTGEVQDSGDVITEGRIRVVFNIPCEPHLDALIQNQHKYSIKYNPGYVLAS
RLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVSNEWMY
SCAVEQLLAEYLERVPELFSYVAKNSQEDVFYEDDIWPGENENGAEKVQEIVTWLKAHPV
SALSRSSCDLQILDAAIVEKIEEEVEKCKQRKSNKKVRVTVKPHLLYRPLEQQQGIIPDR
DAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGASREADVLFEVLFDEEFHGGLRIRCSPA
RGYRLPTSALINLSHGNRSETGNQKLTAIVKPQPAVNPSPLSSSVPSVAVSQKVHSGLNH
SRSLLTPQVPTKDDDEFCSIWQSLQGSGKPQHLQQNSQEKGLVLPQEINRGTTTIQYHKP
GFNDSSIKGQQRKCDHYRKFKEDCKISKNECQSQKIANKQTFGGTPKCHVKLLKRNESPV
ASEIQKVVTDDPNTIGKTNPGIENFLASLKIAKENEVQPSFSEEPPTSEEHLSPQSFAMK
GTQMLKEILKIDATDPADHKNEVKQLVNEVNTSSSRKEVFGASSQPKQTKKLATYINKPH
NPGDCHNAQAIDNLGRPVLSQQPPLSTPVSELSRLCSLVGMPQPDFIFLRTPQTMTVCQV
KLSNGLLIHGPQCPSENEAKEKAAFFALQHLSTVGMNFPLPPPMFPNYPPAVPTGTIPPV
FAQPTGWDHYGSSLAYGAANIMPPSSHIFGSVPWGSPMPIPGKPYHHHAPYPTNMPLPGP
MPVAPHNQFIPLQVTKKRAANKRSVECKGAQGYSSQATPLQSESPGVSEGAQLTSQESSS
NLKSPQVPPTTVSFHDKVASSGSGTSRGKSTPGLSRRKPRKLAVNFGVSKPSE
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atggtctgggcgggcggagcttgtgttgtcatcggcggcgcgacggcggaggcggcggcc
gaggcccgggcggggggtttggtttcggtttggcgacggctgcaagtggggtcggcgacg
gtcgacatgggagtccccaagttttaccggtggatctcggagcggtatccctgcctcagc
gaggtggtgaaggagcatcagattcctgaatttgacaacttgtacctagatatgaatgga
atcatacatcagtgttcacatcctaatgatgatgatgttcatttcagaatttctgatgat
aaaatttttactgatatttttcactacttggaagttttgtttcgcattattaagcccaga
aaagttttctttatggcagttgatggtgtggctccacgggcaaaaatgaaccaacaacgc
gggagacgttttagggctgcaaaggaggctgaagacaaaatcaaaaaagcattagaaaag
ggagaaattcttccctcagaagcaagatttgactccaattgtattacaccagggactgaa
ttcatggccagattacatgagcatctgaagtattttgtaaatatgaagatttcctcagac
aagtcatggcaaggagttactatctacttatcaggccatgagactccaggagaaggagag
cacaaaatcatggaatttatccgatccgagaaaggaaagccagatcatgatccaaacatc
agacattgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgag
tcacatttctctcttttgagagaggaggtccgatttggtggcaaaaaaacacaaagggta
tgtgcaccagaagaaacaacatttcacctcctacacttgtctttaatgagagaatatatt
gactatgagttttctgcattaaaggacaagatttcctttaaatatgacattgaaaggata
atagacgattggattttaatgggatttcttgttggcaatgattttattcctcatctacct
catttgcatatcaatcatgatgcactgcctcttctttatagaacatatatgactgtcttg
ccagaacttggtggttatattaatgaaaatggccatctcaacttacctcggtttgagaaa
tatctcataaaactgtctgattttgatcgtgaacacttcagtgaagtttttgttgacttg
aaatggtttgaaagcaaagtcggcaataaatacctcaatgaagcagcaggtatcgcagca
gaggaagcaaagaactacaaacaaaagaaactaaagggccaggaaaattctatgtgtttg
gctgctttagacaaaactaaagaagaagtcatgacttcaaagagtgtcatagaagatgaa
cctgaagatgatgatctctttgaaacagaatttagacaatacaaaagaacttattacatg
acaaaaatgggggtagaaatcgtttcagatgactttcttgctgaccaagctgaatgttac
gtgcaggcaatacagtggattctgcactactactaccatggagttcagtcctggagttgg
tattacccttaccattatgcaccttatctgtcagatattcgcaacattagtgaactcaaa
attcagtttgaattaggaaaacctttcatgccatttgaacaacttcttgctgtactgcca
gcagccagcaaggatttgcttccagggtgctaccagcatttaatgaccagtgaagaatct
ccaattatagaatactatcctccagattttaaaactgatctaaatgggaaacagcaagaa
tgggaagctgttgttttaatcccattcattgatgaaactagattactgcaggccatggag
tcatgccacaagtatctgagagaagaggaggagaagaggaacagacacagcgagtgcctc
atgtactggtttgatggggattctgggtttaagtacctctctccctggcccgagaggttc
ccacccattgaaaagtgccatgccaggcataaaataatatctttagatgcatggcatgta
gatattaaccagaataaaataactaaagttgaccagaaggcactctatttctgtgggttt
cctactctaaagcacatcaaacacaagttttttctgaagaaaagtggggtacaagtattc
caacaaagcagccgtggagagaatatgatgttagaaatcctagttgatgatgactcagat
gaacttcaaatagaaaatgttgcctcatcagtgctcggaaaatctgtctttgttaactgg
cctcaccttgaagaagctaggattgtggcagtatcagatggagaaactaagttttacttg
gaagaaactcaaggaacacaaaagctttacttagggaaaactgccccaccaactaaagtg
gttcatgttggagataaagaacaatctaactgggtgaaagaagtacaaacaatttcagaa
cactaccagagaagaaaaggaataataataaatgaaacttctgttgttgtgtatgctcag
ttacttaccggtcataaatatcaattaaatcaaaatggtgaggttcatctggagaaacag
tggtcaaaacaagttcttccttttgtttatcaaactattgtcaaggatatcagtgctttt
gagacacatttctctaatatcaaaacattggatgacctatttccacctagaagtacagtc
tttatgctggggactccttactatggctgcacaggagaagttcaagattcaggagatgta
attacagaaggtagaattcgtgtggtttttaacattccatgtgaacctcatcttgatgcc
ttaatacagaaccagcataaatattctataaaatacaatcccggatatgttttggccagt
cgtcttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaaga
ggatctaggagaaatccccatggagaccacaaggccaacgtgggattgaacctgaagttc
aataagaagaatgaagaagttcctggctacaccaaaaaagttagcaatgaatggatgtat
tcttgtgctgtggagcagcttttggcagagtacctcgagagggtaccagaactctttagt
tacgtagctaaaaacagccaagaagatgtattctatgaagatgacatttggcctggtgaa
aatgagaatggtgctgagaaagttcaagaaattgttacgtggctaaaggcgcatcctgtc
agtgctttgtctcgctcatcttgtgatttacaaattctggatgcagctattgttgagaaa
attgaagaagaagtagaaaagtgcaagcaaaggaagagtaataagaaggtacgagtgaca
gtgaaaccccatttactgtacagacctttagagcaacagcagggtattattcctgatcgg
gatgcagagttccgtctttttgaccgtgttgtaaatgtgagagagaacttttcagttcct
gtgggtctccgaggcactatcataggaattaaaggagctagtagagaagcagatgtgcta
tttgaagtattatttgatgaagaatttcatggaggtttaaggataaggtgctcccctgca
agaggttaccgactgccaacaagtgccttaattaacctgtctcatggtaatcgctcagag
actggaaatcagaaattgacagccatagtgaaaccacaacctgctgtgaatccaagccct
ttaagttcctctgttccatctgttgcagtttctcagaaagtccattcaggcctcaaccat
tctcgatcacttttgactcctcaagtacctactaaagatgatgatgaattttgtagtatt
tggcagtcattacagggatcaggaaaacctcaacatcttcagcagaattcacaggagaag
ggtttggttctacctcaagaaataaacagaggtactactactattcagtatcataaacct
ggcttcaatgacagcagcattaagggtcagcaaagaaaatgtgatcattataggaaattc
aaagaagattgtaaaatttctaagaatgaatgtcagtcacaaaagatagcaaacaaacag
acttttggaggaacccccaaatgccatgttaagcttttgaagagaaatgaaagtcctgtt
gcctctgaaatccaaaaggttgtaactgatgatccaaatacgattggaaagactaaccct
ggaattgagaacttcctagcatctttgaaaatcgccaaagagaatgaagtacaaccatcc
ttcagtgaggaaccaccaacaagtgaagaacatttgtcaccacagtcatttgctatgaag
ggaacacagatgcttaaagaaattctgaaaattgatgccacagaccctgcagaccacaaa
aatgaagtaaaacaattagttaatgaagttaatacgtcttctagtagaaaagaggtattt
ggagcttcttcacagcctaagcaaaccaagaagttagctacttatataaacaagcctcat
aatccaggggactgtcataatgctcaagctatagacaatttaggtcggcctgtcctcagt
caacagcctcctttatccacaccagtatcagaactttctcggctttgctctcttgttgga
atgccacaaccagatttcatctttctcagaacgccacagacaatgacagtttgccaggtc
aaattatctaatggcttactcatacatggaccacaatgcccatcggaaaatgaagccaag
gagaaagccgctttttttgctttacaacatctgagcactgtaggaatgaattttcctttg
cctccaccaatgtttccaaattatccacctgctgtacctacaggaaccattcctccagta
tttgcccaacctactggctgggatcactatggaagcagcttagcctatggggcagctaat
ataatgcctccatcttctcacatctttggctcagtgccatggggatctccaatgccaatt
ccagggaaaccttatcaccaccatgctccataccccaccaacatgcctctcccaggacca
atgccagttgcgcctcacaatcagttcatacctcttcaggttacaaagaaaagagctgca
aacaaaagaagtgtggaatgtaagggagcccagggttattcttctcaggccacccctctt
caatcagagtctccaggtgtttcagaaggtgcccagttaacttcacaggaaagttcatct
aatttaaagtcacctcaagttcctcccactacagtttcttttcacgacaaagtagcctct
tcaggctctggtacttctcgtggtaaatcaacaccaggtctttcgagacgaaaaccaagg
aaactggcagtcaactttggtgtttctaaaccatcagaataa
DBGET
integrated database retrieval system
