Monodelphis domestica (gray short-tailed opossum): 100014286
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Entry
100014286 CDS
T01031
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100014286 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdo03041
]
100014286 (PRPF40A)
Spliceosome [BR:
mdo03041
]
Complex A
U1 snRNP components
U1 related factors
100014286 (PRPF40A)
Complex B
100014286 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100014286
NCBI-ProteinID:
XP_001365479
Ensembl:
ENSMODG00000004179
UniProt:
A0A5F8GIU6
LinkDB
All DBs
Position
4:complement(155313955..155375796)
Genome browser
AA seq
1038 aa
AA seq
DB search
MQATPSEAEAGGESPQSCVQAARSDWTAGKPVSLLAPLIPPRSSGQPLPFGPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMENRPPPRGPGNGERRLSSSSLCSS
PWASADGYLRRRPSMGHPGMHYPPMGMHPMGQRGNMQPVPHGMMQQMMPPMGGPPMGQMP
GMMSSVMPGMMMTHMSQASIQPALPPGVNNMDVAVGATSGTQKSMWTEHKSPDGRTYYYN
TETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEG
YQNTIVAGSLITKSNLHAMIKAEESSKEESTTTSAAPVPTTEITTTMSTMAAAEAAAAVV
AAAAAAAAAAAAANASANATISTPSSIVASTTPIVTEPEVTSIVATVIDNDNTVTISTEE
QAQLVTPIVHEQSVEVSSNVPEETSKQEASVDFTPKKEEEDSQPAKKTYTWNTKEEAKQA
FKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSK
YKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKE
KEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALI
CFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPT
ISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFLVEVNTTFEDF
VAVISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAP
PIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSK
KHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASERSSSAESERSYKKSKKHKKKSKKR
RHKSDSPESDADREKDKKEKERENEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSE
GELEKRRRTLLEQLDDDQ
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagcgaggccgaggccgggggcgaatcgccgcagagctgcgtgcaa
gcggcgcgctctgattggacggcggggaagccagtcagcttattggccccgctgatcccg
ccccgcagctccgggcagcctctaccctttggccccagcgggcgccagccactcagatcg
ctccttgttggaatgtgtagcggcagcggccgccgccggagcagcctcagcccgacgatg
aggccggggacgggagccgagcgtggaggcctcatggtgagtgaaatggagaaccgccct
ccaccgcggggtcccgggaacggggagcggagactgtccagctcaagcctctgctccagc
ccatgggcctctgcggacggctacctgaggagacggccctcgatgggacaccctggcatg
cattatccacccatgggaatgcaccctatgggtcagagaggaaatatgcaacctgtacct
catggaatgatgcagcaaatgatgccccctatgggaggtcctccaatgggacaaatgcct
ggaatgatgtcttcagtcatgcctgggatgatgatgactcatatgtctcaggctagcata
cagcctgctttaccgccaggagtaaacaatatggatgtagcagtaggtgcaacatctggc
acacaaaaatcaatgtggactgaacataaatctcctgatggaaggacttactattataac
acagaaacaaagcaatctacctgggaaaaacctgatgatctcaaaacacctgctgagcaa
ttattatctaaatgcccctggaaggagtacaaatctgactctggaaagccttattattac
aattctcaaacaaaagaatctcgttgggccaaacccaaggaactcgaggatcttgaagga
taccagaataccattgttgctgggagtcttattacaaaatcaaacctgcatgctatgatc
aaagctgaagaaagcagtaaagaagaatctaccacaacatcggctgccccagttcctaca
acagaaattacaactacaatgagtacaatggctgctgctgaagctgcagctgctgttgtc
gcggctgcagctgctgcagcagccgctgctgctgcagccaatgccagtgctaatgctacc
atttcgactccttcctccattgttgcttcaactacaccaattgtcactgagcctgaagtt
acttccattgttgctactgtcatagataatgacaatacagtaactatttcaactgaggaa
caagcacaacttgttacacctattgttcatgaacaaagtgtagaagtatctagcaatgtg
ccagaagaaacttcaaagcaggaggcttcagtagatttcactcccaaaaaggaggaagaa
gatagtcaacctgctaaaaaaacatatacttggaatacaaaagaagaagcaaagcaagct
tttaaagaattgttaaaagaaaagagagtaccatctaatgcctcatgggagcaagcaatg
aaaatgattattaatgatccccgatacagtgccctggcaaaacttagtgaaaaaaagcaa
gcctttaatgcatataaagtccaaacagagaaagaagaaaaagaagaagcaagatcaaaa
tataaggaagctaaggaatcctttcaacggtttcttgaaaaccatgaaaagatgacttcc
acgaccagatataaaaaagctgaacaaatgtttggagagatggaagtatggaatgcaata
tcagagcgagatcgtcttgaaatttatgaagatgtcttgttttttctttcaaaaaaagaa
aaggaacaagcaaagcaactgcgaaagagaaattgggaagccttaaaaaatatacttgac
aacatggctaatgttacctattccactacatggtctgaagcccagcaatacctgatggat
aaccctacctttgccgaagatgaggaactacaaaacatggacaaagaagatgcattgata
tgttttgaagaacatatccgggctttagaaaaagaagaggaagaagaaaaacagaagagt
ttgttaagagaaagaaggcgtcaacgtaaaaatagagaatcttttcagatatttttagat
gagttgcatgaacatggacagctgcattctatgtcatcttggatggagttatatccaaca
attagttctgatattagattcaccaacatgctcggtcagcctggatcaactgcacttgat
cttttcaagttttatgttgaagatctaaaagcacgttatcatgatgaaaagaagataata
aaagacatcctaaaggataaaggatttctggttgaagtaaatactacttttgaagatttt
gttgcagtaataagttcaaccaaaagatcgacaacattagatgctggaaacatcaaattg
gcttttaatagtttgttagaaaaggcagaagcccgtgagagggaacgagaaaaggaggag
gcgcgaaagatgaaacgaaaagagtctgcatttaagagtatgttgaaacaggctgctcct
ccaatagaattggatgcagtctgggaagatatccgggaaagatttgtaaaggaaccagca
tttgaggatatcactctagagtctgaacgaaaaaggatatttaaggatttcatgcatgtg
cttgagcatgaatgtcagcaccatcattcaaagaacaagaaacattctaaaaaatctaaa
aaacatcacaggaaacgttcccgttctcgatcgggctcagattcagatgatgatgacagc
cattcaaagaaaaagaggcagcggtcagagtcccgatctgcttcagaacgttcttctagt
gctgagtctgagagaagttacaagaaatcaaaaaagcataagaagaaaagcaagaagagg
agacataaatctgattctccagagtctgatgctgatcgagagaaggataaaaaagaaaaa
gaacgagaaaatgaaaaggatagaactaggcagagatcagaatcaaaacacaaatcaccc
aaaaaaaagactggaaaggattctggtaattgggatacttctggcagtgaactgagtgaa
ggggaattagaaaaacggagaaggaccctcttggaacaactggatgatgatcaataa
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