Monodelphis domestica (gray short-tailed opossum): 100015557
Help
Entry
100015557 CDS
T01031
Symbol
RAD50
Name
(RefSeq) RAD50 double strand break repair protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03440
Homologous recombination
mdo03450
Non-homologous end-joining
mdo04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100015557 (RAD50)
03450 Non-homologous end-joining
100015557 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
100015557 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdo03032
]
100015557 (RAD50)
03400 DNA repair and recombination proteins [BR:
mdo03400
]
100015557 (RAD50)
DNA replication proteins [BR:
mdo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100015557 (RAD50)
DNA repair and recombination proteins [BR:
mdo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100015557 (RAD50)
BRCA1-C complex
100015557 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
100015557 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
ABC_tran
AAA_29
Intein_splicing
Nup54_57_C
AAA_13
Motif
Other DBs
NCBI-GeneID:
100015557
NCBI-ProteinID:
XP_001366194
Ensembl:
ENSMODG00000013947
LinkDB
All DBs
Position
1:307545089..307647676
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSIMGVRSFGIEDKDKQVITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNTFVHDPKVAQETDVKAQIRLQFRDVNGEIVAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRSVRHDQSVRVKECQTELKYLKQNKEKALEIRDQIVSKEAQLASSKEF
VKSYENELGPLKTHLKEIEQNLSKIVRLDNDIKALESRKKQMEKDNSELEQKMEKVFQGT
DEQLNDMYHNHQRTVREKERKLIDCQRELDRTNKESKLLNHEKSGLLVEQGRLQLQANHH
QQNIRARDSLIQALATHLELDGYERAPFNERQIKNFQKLVKEIEEREIETNRRMMNDFAG
KESMKQKQIDEIRDKKTGLERIIELKLEIQNKKQTELKNVKYELQELEGSSDRILELDQE
LRKTELELGKAEKNSNIGALKEEVPALLREKGDLDRSLRKLDQEMEQLNHHTMTRTQMEM
LTRDKADKDEQIRKIKSRHNDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKFNKE
LASAEQNKNHINHELKQKEEQLSQYEDKLFDVCGSQDFESDLDKLMDEIEKSSKQRAMLA
GATAVYSQFITQLTDEKQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RREKRRNEMMELKPMRQSIIELKEREIPELRNKLQNVNRDIQHLKGEIEEQETLLGTIIP
EEESAKACLTDVTIMERLQMELRDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHRLD
TVSSKIELNRKLIQDQQEQIQHLKSTVNELKSEKLQISSNLQRRQQLEEQTVELSTEVQS
LHREIKDSKEQLCPLEATLGKLQQEKEELINKKNTSNSAAQEKLNDIKEKVKNISSYMKD
IENYIQDGKDSYKTQKEAELNNVISQLNECEKQKDKISKEMGTMRQDIDMQKVQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQLKNEYQTLEEKIETLKRNHSLALGRQKG
YEEEIIHFKRELREPQFSDAEEKYREMMIVMRTTELVNKDLDIYYKALDHAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDTDENVTASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIRKNIDQCSEIIKCNVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgaaaaaatgagcattatgggtgtgaggagttttggaatagaggacaaa
gataagcaagttatcactttcttcaatcctttaacaattttggttggacccaatggtgca
ggcaagacgaccatcattgaatgtctgaaatatatttctactggagatttccctcctggt
accaaaggaaatacatttgttcatgatccaaaggttgctcaagaaacagatgttaaagct
cagattcgtctacagtttcgtgatgtcaatggggaaattgtagctgtacagaggtcaatg
gtgtgtactcagaagagtaaaaagacagaatttaaaaccttggaaggagtcattactaga
acaaagcatggtgagaaggtcagcctgagctctaagtgtgctgaaattgaccgagagatg
atcagttctcttggtgtttccaaatctgtgcttaataatgtcattttctgtcaccaagaa
gattccaattggcctttaagtgaagggaaagccctgaaacagaaatttgatgaaatcttc
tcagcaacaaggtatattaaagccttagagactcttcgttcagtgcgtcatgaccaaagt
gtgcgggtaaaggaatgccagacagaactgaagtatctgaaacagaacaaggaaaaagct
cttgagattcgtgatcagattgtcagcaaggaagctcaattagcatcttctaaggagttc
gtcaagtcctatgaaaatgagcttggaccactgaagacccatctaaaagaaattgaacag
aatctttccaaaatagtgaggcttgacaatgacattaaagctctggagagtagaaagaag
caaatggaaaaggacaacagtgaactagagcagaaaatggaaaaggtatttcaagggact
gatgaacagctaaatgatatgtaccataaccatcagagaacagtaagagaaaaggaaagg
aaactaattgactgtcagcgagagctggacagaacaaataaagagtctaagctactgaat
cacgaaaaatcaggactacttgtggaacagggccgtctacaactacaagcaaatcaccat
caacagaacatccgagctagagattcattaatccaggctttggcaacacatttagaatta
gatggatatgagcgagcaccatttaatgaaagacaaattaaaaattttcagaagcttgtg
aaggagatagaagaaagagaaatagaaactaatagacgaatgatgaatgattttgcagga
aaagaaagtatgaaacaaaagcagatagatgaaataagagataagaaaactggcctggaa
agaataattgaactgaaattagaaatacaaaataagaagcagactgaactgaaaaatgta
aaatatgaactgcaagagttagaaggctcttcagacagaattctcgaactggaccaggaa
ctcagaaaaaccgaacttgaacttggcaaggcagagaaaaacagtaacataggagcacta
aaagaagaagtaccagcactattacgggagaaaggagacctggacagaagccttcgtaaa
ttagaccaggagatggaacagttaaatcaccataccatgacaagaactcaaatggaaatg
ctgaccagagacaaagctgacaaagatgaacaaataagaaaaataaaatctagacacaat
gatgaattaacttcattgttaggctattttcccaacaaaaagcaacttgaagactggctt
catagtaaatccaaagaaattaatcagacaagggacagacttgccaaatttaacaaagaa
ctagcttcagcagaacaaaataaaaatcacatcaaccatgaactcaaacagaaggaagaa
cagttgtcccaatatgaagacaagctatttgatgtttgtgggagtcaggattttgagagt
gatttagataagctaatggatgaaattgaaaaatcttctaaacaaagagcaatgcttgct
ggagccacagcagtttactctcaatttattactcagctaactgatgaaaaacagtcgtgt
tgcccagtttgtcagagagtttttcagacagaggcagaactacaagatgtgataagtgat
ttgcaatccaagctacgccttgctcctgacaaactcaaatcaacagaatctgagctgaag
agaagagaaaaaaggcgtaatgaaatgatggagcttaaaccaatgagacaaagcataatt
gagttgaaggaaagagaaataccagagttgagaaataaactacagaatgtgaacagagac
atacagcatctaaagggcgaaattgaagaacaagagacactcttgggtactataatacct
gaagaggaaagtgctaaagcatgtttaacagatgttactattatggaaagattacagatg
gaacttagagatgttgaaagaaaaattgcacaacaagctgctaagctacaaggagttgat
ttggatcgaactgttcaacaagtaaaccaagaaaagcaagaaaaacagcatagattagac
acagtttccagtaaaattgagttgaatcgtaagcttatacaggaccaacaagaacaaatc
caacacctaaaaagcacagtaaatgaacttaaatcagaaaaacttcagatatctagtaat
ttgcaacgtcgacagcaactggaggagcagacagtagagttgtcgacagaagttcaatcc
ttacatcgagaaataaaagattcaaaagagcagctatgcccactagaagcaaccctgggg
aaattgcagcaagaaaaagaagaattaattaacaaaaagaatacaagtaacagtgcagca
caggaaaaattaaatgatatcaaagagaaggttaaaaatatctctagttacatgaaggac
attgagaactatattcaggatggaaaagacagctacaaaacgcaaaaagaagctgaactt
aataatgtaataagtcagctaaatgaatgtgaaaaacaaaaagacaagataagtaaggaa
atgggaacaatgagacaagacatcgatatgcaaaaggtacaggaaaggtggctacaagat
aaccttactctgaggaagagaaatgaggaattgaaagaagttgaagaagaaagaaagcag
cacttaaaggagatgggacaaatgcaggttttacagctgaaaaatgaatatcagacatta
gaagaaaaaatagaaacactgaaaagaaatcacagtttggcattaggacgacaaaaaggt
tatgaggaagaaattattcattttaagagagaactgcgagaaccacagttttctgatgct
gaggaaaagtacagagaaatgatgattgtgatgagaacaacagaacttgtgaacaaggac
ctcgacatttattacaaggcattggaccatgcaataatgaagtttcatagcatgaaaatg
gaagaaatcaataaaattattcgtgatctctggcgaagtacctaccgaggccaagatatt
gaatatatagaaattcgatctgatacagatgaaaacgtaacagcttctgacaaaaggagg
aattacaactatagagtcgtaatgctaaaaggagatacagccttggatatgcgaggacgg
tgtagtgctgggcaaaaggtacttgcttctcttatcattcgcttggccctggcagaaacc
ttttgtctgaactgtggcattcttgccttggatgagcctacaacaaaccttgatagagaa
aacattgaatctcttgcacatgcactagtagagataataaaaagtcgttctcagcaacgg
aacttccagcttcttgtgattacccatgatgaagactttgtggagcttttgggtcgttcg
gagtatgtagagaaattctacaggattaggaagaacattgatcagtgctcagagataatc
aaatgtaacgtcagctccctgggctcctatgttcattaa
DBGET
integrated database retrieval system
