Monodelphis domestica (gray short-tailed opossum): 100016004
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Entry
100016004 CDS
T01031
Symbol
VPS41
Name
(RefSeq) VPS41, HOPS complex subunit
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo04140
Autophagy - animal
mdo04148
Efferocytosis
mdo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100016004 (VPS41)
04148 Efferocytosis
100016004 (VPS41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100016004 (VPS41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mdo04131
]
100016004 (VPS41)
Membrane trafficking [BR:
mdo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100016004 (VPS41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_Vps41
TPR_Vps41
zf-RING_Vps41
WD40_CDC20-Fz
ANAPC4_WD40
WD40_Prp19
zf_RING_Vps8_fungal
Beta-prop_HPS5
Beta-prop_EML_2
zf_RING_Vps8
WD40_WDHD1_1st
zf-RING_5
Frtz
Beta-prop_RIG_2nd
RIG-I_C
Beta-prop_IFT140_2nd
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
100016004
NCBI-ProteinID:
XP_016279206
Ensembl:
ENSMODG00000012622
LinkDB
All DBs
Position
6:complement(284214369..284361090)
Genome browser
AA seq
888 aa
AA seq
DB search
MAEAEKDVSVEESTDESEEEESEEEPKLRYERLSNGVTEILQKDAASCMTVHEKFLALGT
HYGKVYLLDVQGNITQKFDISPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHET
FDCPIKIIAVHPQFLRSHCKQFVTGGKKLVLFERSWMSRWKSSVLHEGEGNIRNVKWRGN
LIAWANNMGVKILDVISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGSSVKICS
VKERHASEIRDLPNRYVEIVSQFDMEFYISGLAPLCDQLVVLSYVKETSDKMEREYCARP
RLDIIQPLPETCEEISSDALTVRGFQENECRDYHLEHSEGESLFYIVSPRDVVVAKERDQ
DDHIDWLLEKKKYEEALLAAEISQRNIKRHKILDIGLAYISHLVEKGEHDMAARKCQKVL
GKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIRE
WPGDLYNNSVIVQAVRDHLKKDPQNTTLLRTLAELYTYDKSYSQALQIYLTLRHKDVFQL
IHKHNLFSAIQDKIVLLMDFDSEKAVDMLLDNEDKISIKRVVEELENRPELQHVVSHKLF
KRDHHKGQRFHEKQISLYAEYDRPNLLPFLRDSTHCPLEKGGKRSVETSCTEAGRPAVFP
APTFSLTMLGGPVGPGRGRGRRSAMRWAKRAEKGATEGQMGGSQRPLLALPTAGQAVVCP
PARAPAVGGLPVTPGLPPPSPAFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKI
LQDYNLQILLREGCKKILVADSLSLLKKMHHTQMKGVLVDEENICESCLSPVLPPDVAKP
FSVVVFHCRHMFHKECLPVPSMNSSGQFCNICSAKNRGPGSAILEMKK
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcagagaaggacgtgtcggtggaggaatccacagatgagtcagaggaagaa
gaaagtgaagaagagcccaaactgcgatatgaaaggctttccaatggggtgactgaaatt
ctacagaaagatgccgccagttgcatgacggtacatgagaagtttctggccctgggcacg
cattacggcaaggtttatttgctcgacgtccaagggaatatcactcagaagtttgacatc
agccccgtgaagatcaatcagattagcctggatgagagcggagagcacatgggcgtgtgc
tccgaggacggcaaggtgcaggtgtttggactgtactctggggaggaatttcatgagacc
tttgactgtccaatcaaaatcatcgctgttcacccccagtttctgaggtcccactgcaag
cagtttgtaactggaggaaagaagttggtgttgtttgagagatcgtggatgagcagatgg
aaatcttctgttttgcacgaaggagaaggcaacataagaaacgtaaagtggaggggaaat
ctaatcgcctgggccaataacatgggtgtaaagatcctcgacgtcatatcaaagcagaga
atcaccaatgtgccccgagatgacatcagcctccgcccagatatgtacccttgcagcctc
tgctggaaagataacgtcaccctcatcattggctggggctcctccgtcaagatctgctcg
gtgaaggaacggcatgccagtgaaatccgagacctgcccaaccgctacgtcgaaatagtt
tcgcagttcgacatggaattctacattagtgggctcgcgcctctctgcgaccagctcgtg
gtgctctcctatgtcaaggagacctcggacaaaatggagagggaatactgtgcccggccg
agactggacatcattcagccccttcccgagacctgtgaagagatctcttcggatgccctc
acagtgagaggttttcaggagaatgagtgtcgagactaccacctggagcattccgaaggt
gagtcgctcttttatatcgtcagtcccagggatgtggttgtggccaaggaacgggaccaa
gacgaccacatcgactggctcctcgagaagaagaaatatgaggaagctctgctggctgcc
gaaattagccaaaggaatattaagaggcacaagattctggacataggcctggcctacata
agtcacctggtggagaaaggagagcatgacatggcagcccgcaaatgtcagaaagttctt
gggaaaaacgcagctctctgggaatatgaagtttacaaatttaaagaaattggacagctt
aaggcgatcagcccgtatttgccacgaggggatcccgtcctgaagccgctcatctatgaa
atgatcctacacgagtttttggagagcgactacgagggctttgcgacgctgatccgagag
tggcccggggacctctacaacaactcggtcatcgtccaggctgtccgggaccacctcaag
aaggacccccagaacacgacgctgctccgaacgctggccgagctgtacacctacgacaag
agctacagccaggccctgcagatctacctgacgctccgccacaaggacgtcttccagctg
atccacaagcacaatctcttcagcgccatccaagacaagatcgtgctgctcatggacttc
gattccgagaaagccgtggacatgcttctggacaacgaggacaagatttccataaagaga
gtcgtggaagaactggagaaccggcccgagctgcagcacgtggtgagccacaagcttttc
aagagagaccatcacaagggccagcgcttccacgagaagcagatcagcctttatgccgag
tacgatcgccccaacctgctcccgtttctccgagacagcacccactgccccctggagaag
ggagggaagcggagtgtagaaacgtcctgcacagaggccggccgccccgccgtgtttccc
gcccccacctttagcctgacgatgcttggagggcctgttgggccggggcggggcaggggg
cggcggagcgccatgcggtgggcaaagagggcagagaagggagccacagaagggcagatg
gggggctcccagcggccgctcctcgccctccccactgcaggacaggccgttgtctgcccg
cccgcccgcgccccagccgttggtgggctcccggtaactcccggccttcccccgccctcc
ccagccttcatcacgggcctgctgaacaacatcggcacccacgtggaccccatcctgctc
attcaccgcatcaaggagggcatggagatcccgaacctgcgggactcgctcgtcaagatc
ctgcaggactacaacctccagattctgcttcgggaaggctgcaagaagatcctggtggcc
gactccttgtctctcctgaagaagatgcaccacacgcagatgaagggggtcctcgtcgac
gaagaaaacatctgtgagtcgtgcctgtccccggtgctccctccagatgtggccaagccc
ttcagcgtggtcgtcttccactgccgtcacatgttccacaaggagtgtctgcccgtgccc
agcatgaattccagcggacagttctgtaacatctgcagcgccaagaaccgtggcccgggc
agcgccatcttggagatgaagaagtag
DBGET
integrated database retrieval system
