Monodelphis domestica (gray short-tailed opossum): 100017078
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Entry
100017078 CDS
T01031
Symbol
SKIV2L2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100017078 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100017078 (SKIV2L2)
03041 Spliceosome [BR:
mdo03041
]
100017078 (SKIV2L2)
03009 Ribosome biogenesis [BR:
mdo03009
]
100017078 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
mdo03016
]
100017078 (SKIV2L2)
Enzymes [BR:
mdo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100017078 (SKIV2L2)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100017078 (SKIV2L2)
Spliceosome [BR:
mdo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100017078 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
100017078 (SKIV2L2)
Ribosome biogenesis [BR:
mdo03009
]
Eukaryotic type
Pre-60S particles
Helicases
100017078 (SKIV2L2)
Transfer RNA biogenesis [BR:
mdo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100017078 (SKIV2L2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100017078
NCBI-ProteinID:
XP_007486383
Ensembl:
ENSMODG00000019494
UniProt:
F6VUX5
LinkDB
All DBs
Position
3:17769476..17852972
Genome browser
AA seq
1033 aa
AA seq
DB search
MADAFGDELFSVFEDESPAAGAKKGKGAAEAPGKAKKRTDDKSQSASTNVGKNKRDLELE
GSDEPIFGKKPRVENTLAEDVSLADLMPRVKVEAVETVEGCTHEVALPADEEYVPLKARD
GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT
DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTAEEKKMVEEVFNNAID
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGI
NMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKKLE
AQYNAIAIPNEESVVIYYKIRQQLAKLAKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDF
GWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPGEKGEMQVV
PVLVHLLSAISSVRLYIPRDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQG
LKKVIQKVEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKSAKRELKKARTVLQMD
ELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALL
SCFVFQENSTELPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLNTFKSNLMDV
VYTWATGCTFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK
IKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcattcggggacgagctcttcagcgtgttcgaagatgaatcgccggctgcc
ggggctaagaaagggaaaggggcagcggaggccccaggcaaggccaaaaaacggacagat
gataaatcacagtcagcctccaccaatgttggaaaaaacaaaagagatttagaattggaa
ggttcagatgaacccatatttggaaagaagccaagagtagaaaatacattagctgaagat
gtaagtctggcagatctgatgcccagagtcaaggtagaagctgtggaaactgttgaaggc
tgtacacatgaggttgcacttcctgcagatgaagaatatgttccactgaaggcacgagat
ggaaaagctgccaaggaatatccattcattcttgatgcctttcagagagaagccattcaa
tgtgtagataataaccagtctgttttagtttctgcacatacgtcagctggaaaaactgtg
tgtgctgagtatgccattgctttggctttgagagaaaagcagcgtgtgatatttaccagc
ccaattaaagccttaagcaatcagaagtatcgtgagatgtatgaagaatttcaagatgtt
ggcctgatgactggtgatgtcactataaaccctacagcatcttgcctggttatgactact
gagattttgcgaagtatgctataccgaggttctgaagttatgcgagaagttgcttgggtt
atatttgatgaaattcattatatgagagattcagagcgtggtgtggtatgggaagaaact
attattttgcttcctgataatgttcactatgtcttcctttctgctactattccaaatgct
cgacagtttgcagagtggatttgtcatttacataaacagccttgccatgtaatttacaca
gattatcgaccaactccattgcagcattatatctttccagcagggggagatggccttcat
cttgtcgttgatgaaaatggcgacttcagagaagataattttaatactgcaatgcaagta
cttagggatgcaggagatttggcaaaaggagatcagaagggaaggaaaggaggaacaaaa
ggaccatcaaatgtgttcaaaattgtgaagatgattatggaaagaaattttcagcctgta
attattttcagtttcagtaagaaagactgtgaagcatatgcccttcagatgaccaaatta
gatttcaacacagctgaagaaaagaagatggttgaagaagtatttaataatgcaattgac
tgcttatctgatgaagataaaaagcttcctcaggttgaacatgtgcttcctcttttgaag
agaggaatcggtattcatcatggtggcttgcttcctattttgaaagaaaccattgaaatt
ctgttttcagaaggattaataaaggccttgtttgcaacagaaacttttgctatgggaatt
aacatgcctgccaggactgttttgtttacaaatgcccgtaaatttgatggaaaagatttt
cgatggatttcttctggtgaatatattcaaatgtctgggagagctggaagaagaggaatg
gatgagagaggaatagtcattcttatggtggatgaaaagatgagtccaactgttggaaaa
cagctactaaagggctcagctgatcctctcaatagtgcttttcacttgacctacaacatg
gttctgaatttgctgcgtgtagaagaaattaaccctgaatacatgttggaaaaatccttt
tatcagtttcagcattatagagctattccaggagtagtagagaaggtaaaaaaactagaa
gcacagtacaatgcaatagcaattccaaatgaagaaagtgtagtcatctactacaaaatc
aggcaacagcttgccaaactggctaaagagatagaagaatatattcacaaaccaaaatac
tgtttgccatttttgcagccaggacgattggtaaaggtaaagaatgaaggggatgatttt
ggttggggagtggtggtgaatttctccaagaaatcaaatgttaagcctaattctggtgaa
ctagatcctttatatgttgtggaagtactcttacattgtagcaaagagagtttgaaaaat
tctgccacggaggctgctaaaccagcaaaacctggtgagaaaggagagatgcaggtggtt
ccagttctggtgcatctcctgtctgctatcagcagtgttcggctttatattcccagagat
ctgaggccaattgacaaccggcagagtgttctaaaatcaatacaggaagttcagaaacgt
tttcctgatggtgtcccattactagatcccattgatgacatgggcatacaagatcaagga
ctgaaaaaagttattcagaaagtagaagcgtttgaacatagaatgtattctcatccactt
cacaatgactcaaatttggagactgtttataagctttgtgaaagaaaagcacagattgca
gtagatattaaatctgcaaagcgagaactaaagaaagcaagaactgttttacaaatggat
gagctaaagtgtcgaaaacgtgttttgcggagactgggttttgctacatcttctgatgtc
atagagatgaaaggacgagtggcttgtgagatcagcagtgctgatgaactgcttttaact
gaaatgatgtttaatggacttttcaatgacctctctgcagagcaggcaactgcattgcta
agctgttttgtatttcaagagaattccactgaattgcccaaattgacagaacagttagca
ggaccacttcgccagatgcaagaatgtgctaaaaggattgcaaaagtttcagcagaggcc
aaattagaaattgatgaagagacttacttaaacacattcaagtcaaacttaatggatgta
gtctatacctgggcaactgggtgtacatttgcccacatctgtaaaatgactgatgtcttt
gaaggcagcatcatccgctgtatgaggcgcctggaagagctgcttcggcagatgtgtcaa
gcggccaaagccatcgggaacaccgagctggagaacaagtttgcggaaggaatcaccaaa
atcaagagagacattgtgtttgctgcaagcctttacctgtaa
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