KEGG   Monodelphis domestica (gray short-tailed opossum): 100017767
Entry
100017767         CDS       T01031                                 
Symbol
POLR2J
Name
(RefSeq) RNA polymerase II subunit J
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
mdo  Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03020  RNA polymerase
mdo03420  Nucleotide excision repair
mdo05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:mdo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100017767 (POLR2J)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100017767 (POLR2J)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    100017767 (POLR2J)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdo03021]
    100017767 (POLR2J)
   03400 DNA repair and recombination proteins [BR:mdo03400]
    100017767 (POLR2J)
Transcription machinery [BR:mdo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100017767 (POLR2J)
DNA repair and recombination proteins [BR:mdo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100017767 (POLR2J)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L SHNi-TPR
Other DBs
NCBI-GeneID: 100017767
NCBI-ProteinID: XP_001366429
Ensembl: ENSMODG00000013617
UniProt: F6VE83
LinkDB
Position
2:complement(528615392..528622202)
AA seq 117 aa
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
NT seq 354 nt   +upstreamnt  +downstreamnt
atgaatgcgcctccggccttcgagtccttcctcctcttcgaaggagagaagaagattact
atcaacaaggacactaaggtacccaatgcctgtttgttcaccatcaacaaggaggaccac
acactgggaaacatcatcaaatcacagttactgaaagacccccaggtgctatttgcaggc
tataaagtcccccacccactggaacacaagatcatcattcgtgtacagaccactccagat
tatagccctcaggaggctttcactaacgctatcacagatctgatcagcgagctctccttg
ttggaggagcgattccgggttgctattaaggacaaacaagaaggaattgagtag

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