Monodelphis domestica (gray short-tailed opossum): 100018797
Help
Entry
100018797 CDS
T01031
Symbol
LSM5
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03018
RNA degradation
mdo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100018797 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
100018797 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100018797 (LSM5)
03041 Spliceosome [BR:
mdo03041
]
100018797 (LSM5)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100018797 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
100018797 (LSM5)
Spliceosome [BR:
mdo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100018797 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
100018797
NCBI-ProteinID:
XP_007500708
UniProt:
K7E2K7
LinkDB
All DBs
Position
6:286065370..286080333
Genome browser
AA seq
91 aa
AA seq
DB search
MAVNATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcaacgctaccactaacccctcgcagcttctgccgcttgaactcgtggacaaa
tgtataggttcccggattcacatcgtgatgaagagcgacaaagaaatcgtgggcaccttg
ctgggattcgatgactttgtcaatatggtgttggaagatgtcactgagtttgagatcaca
cctgaaggaaggaggataaccaagcttgatcagatcttgctaaatggaaataacataaca
atgctcgttcctggaggagaaggacctgaagtatga
DBGET
integrated database retrieval system
