Monodelphis domestica (gray short-tailed opossum): 100019289
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Entry
100019289 CDS
T01031
Symbol
DICER1
Name
(RefSeq) dicer 1, ribonuclease III
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100019289 (DICER1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mdo03036
]
100019289 (DICER1)
Chromosome and associated proteins [BR:
mdo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100019289 (DICER1)
microRNA pathway
RISC loading complex
100019289 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
ResIII
DEAD
Helicase_C
Cas3-like_C_2
SLFN-g3_helicase
DSRM_2
Motif
Other DBs
NCBI-GeneID:
100019289
NCBI-ProteinID:
XP_001367933
Ensembl:
ENSMODG00000012624
LinkDB
All DBs
Position
1:327299619..327426711
Genome browser
AA seq
1923 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGNFNRNGKRTVFLVNSANQVAQQASAVRTHSDLK
VGEYSSLEISASWTKEKWNQEFIKHQVLVMTCQVALNVLKNDYLSLSNINLLVFDECHLA
ILDHPYREIMKICEDCPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDTSGLYERLLKELDEALNFLNDCNISVHSKEKDSILISK
QILSDCRAVLVVLGPWCTDKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
MEYRSYVQSKGRARAPISNYIMLADSDKIKSFEDDLKTYKAIEKILRNKCSKSVDTGETE
TEPIVDDDDIFPPYVLRPDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPD
GTFYSTLYLPINSPLRAAIVGPQMNCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRNSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVNDSSTLDIDFKFMDDI
EKSEARIGIPSTQYTKETPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISIPNSSLAESENYCKHSTIVVPENAAHQGANR
TSSVENHDQMSVTCRSLFSESPSKIQIEVSTELTAINGISYNKNLANGSYDLVNRDFCQG
NQLNYYRQEIPVQPTTSYPIQNLYNSENQPKPNNECTLLSNKYLDGNANKSTSDGCPTKA
VTATTSTSEISIASKGRIDSEQNPSNGYSSKTLGPNPGLILQALTLSNASDGFNLERLEM
LGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPP
VNWLPPGYIVNQDKSNTDKWEKDEMTKDNMLANGKLDEDYDEEEDEDLMWRVPKEEVDYE
DDFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSTNDSNYEWKMPKKSSLGNMPFSSDID
DFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGIDTGKQSISYDLHTEQCIADKSI
ADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRSDWETTLYPSKDNFNSQQKNLSV
NYASISVANLQSSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYNFKN
KAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSAL
VNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKE
EDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLE
MEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQV
PNS
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcaggactgcagctcatgacccctgct
tcctcaccaatgggtcctttttttggactaccatggcaacaagaagcaattcacgataac
atttacaccccaagaaaatatcaggttgaactgcttgaagcagctctggatcataataca
atagtctgtttaaacactggctcagggaagacatttattgcagtactactcactaaagag
ctgtcctatcagatcaggggaaatttcaacagaaatggaaaaaggacggtgttcttggtc
aactctgcaaaccaagttgctcagcaagcatcagctgtcagaacacattcagatctcaag
gttggagaatattcaagcttagaaataagtgcatcctggacaaaggagaaatggaaccaa
gagtttattaaacatcaggttctggttatgacctgccaagtcgccttgaatgttttaaaa
aatgattacttatctctgtccaacattaacttgttggtatttgatgagtgtcatcttgca
atcctggaccatccctatcgagaaattatgaagatctgtgaagattgtccatcatgtccg
cgaattttgggattaactgcttctattttgaatgggaagtgtgatcctgcagaattggag
gagaagatacaaaaactggagaaaatccttaagagtaatgctgaaactgcaactgatttg
gtagtcttagacagatatacttctcagccatgtgagattgtggtagattgtggaccatat
actgatactagtgggctctatgaaaggctgctaaaggaattggatgaagcacttaatttt
ctaaatgactgcaacatatctgtgcattcaaaagaaaaggattctatattaatttctaaa
cagattctttcagactgccgagcagtattggtggttctgggaccctggtgtacagataag
gtagctggaatgatggtaagagaacttcagaaatatatcaaacatgagcaagaggagctg
cacaggaaatttttattgtttacagacacttttctaaggaaaatacatgcactctgtgaa
gagcacttctcacctgcctcacttgacctgaaatttgtaaccccgaaagtaataaaactg
cttgaaattttacgtaaatataaaccatatgaacggcagcaatttgagagcgttgaatgg
tataataataggaatcaagataattatgtgtcttggagtgattctgaagatgatgatgag
gatgaagaaattgaagaaaaagagaagccagagacaaattttccctctccatttaccaat
atcttatgtggaattatttttgtggagagaagatatacagcagttgttttaaacagattg
ataaaggaagctggcaagcaagatccagaactggcttatattagcagcaactttataact
ggacatggcattggaaagaatcaacctcgtaataaacagatggaagtggagttcagaaaa
caggaagaggtacttagaaaatttagggcacatgagaccaacctacttattgcaactagt
attgtagaagagggtgttgacataccaaaatgcaacctggtggttcgttttgatttgcct
atggaatatcgatcttatgtacagtccaagggaagagcaagggcacccatctctaattat
atcatgttagctgattcagacaaaataaaaagttttgaagatgatcttaaaacttacaaa
gctattgaaaagatcttaagaaacaaatgttccaaatcagttgatactggtgagactgaa
actgaacctattgtggatgatgatgatattttcccaccctatgttttgaggccagatgat
ggaagtccaagagttacaattaatacagccattggacacatcaatagatactgtgcaaga
ttaccaagtgatccgtttactcatctagctcctaaatgtaagacccgagaattgccagac
ggtacattttactcaactctctatctgccaattaactcgcctctccgtgctgccattgtt
ggtccacaaatgaattgtgcaagactggctgaaagagttgtagctcttatttgctgtgaa
aaactgcacaaaattggtgaactagatgatcatttgatgccagttggaaaagagactgtt
aaatatgaggaagagcttgatttacatgatgaagaagaaaccagcgttccaggccgacca
ggctccacaaaacgaaggcagtgttatccaaaagcaattccagaatgtttgaggaatagt
tatcctaaacctgatcagccctgttacttatatgtaatcggcatggtattaactactcct
ttacctgatgaacttaactttaggagacgaaagctttatcctccagaggatactacaaga
tgctttggaatactgacagccaaacctatacctcagattcctcactttcctgtgtataca
cgctctggagaggttactatatctattgagttgaagaagtctggtttcactttgtcctta
caaatgcttgagctgatcacaagacttcaccagtacattttctcacatattcttcggctt
gaaaaacctgcactagaattcaaacccacagaagctgattcagcctactgtgttctacct
cttaatgttgttaatgactccagcactttggacattgactttaagttcatggatgatatt
gaaaaatctgaagctcgtataggcattcccagtactcagtatacaaaagaaacacctttt
attttcaaactagaagattaccaggatgcagttatcattccaaggtatcggaactttgat
cagcctcatcgattttatgttgctgatgtatatactgatcttacaccactcagtaaattc
ccatcccctgaatatgaaacttttgcagaatattataaaacaaagtacaatcttgacctg
accaatctaaaccagccactgctggatgtggaccatacatcttcaagacttaatctattg
actcctcgacatttaaatcagaaggggaaagcccttccactaagtagtgctgaaaaaagg
aaagccaaatgggaaagtctacaaaataaacagatattggttccagagctctgtgcaatt
catccaattccagcatcattatggagaaaagcagtttgtctccctagcatactttatcgc
ctgcactgccttttgacagcagaggaactaagagcccagacagccactgatgctggtgta
ggggtcaaatcactccctgctgatttcagatatcctaacttggactttggatggaaaaaa
tctattgacagtaaatctttcatctcaattcctaactcctctttagctgaaagtgaaaat
tattgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggcgctaataga
acctcctctgtagaaaatcatgaccagatgtctgtgacctgcagatcattattcagtgag
tcacccagtaagatccaaattgaagtttccacagaactcacagcaattaatggtatttca
tacaataaaaatcttgccaatggcagttatgatttagtcaatagagacttttgccaagga
aatcagctaaattactataggcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaatagtgagaaccagcccaaacccaacaatgaatgtactctgctgagt
aataaatatcttgatggaaatgctaacaaatctacctcagatggatgccccacaaaggca
gtgacagcgaccaccagtacttcagaaatttctattgcttcaaaagggagaattgattct
gaacaaaacccttccaatggatactcctcgaaaacccttggcccaaatcccggactcatt
cttcaggctctgaccctttctaatgctagtgatggatttaacttggaacgacttgaaatg
cttggggactcctttttaaagcatgcaatcaccacatatctgttttgcacttatcctgat
gctcatgagggccgcctttcttatatgagaagtaaaaaggtcagcaactgtaatctctat
cgccttgggaaaaagaaaggtctgcccagtcgcatggtagtgtcaatttttgatccccct
gtaaattggcttcctcctggttacatagtaaatcaagacaaaagtaacacagataaatgg
gaaaaagatgaaatgacaaaagacaatatgttggcaaatggtaaactggatgaagattat
gatgaggaagaagatgaagaccttatgtggagggttccaaaggaggaagtggattatgaa
gatgattttttggagtatgatcaggaacatattaaatttatagataacatgttaatggga
tcaggggcttttgtgaagaaaatttctctttctccgttttcaaccaatgattcaaattat
gaatggaaaatgcccaaaaaatcgtccctaggtaatatgccattttcatctgatattgat
gattttgattatagctcttgggatgcaatgtgttatttggatcctagcaaagctgttgaa
gaggatgattttgtagtagggttctggaatccatcagaagaaaattgtggcatcgacaca
gggaaacagtcaatttcttatgacttgcatacagagcagtgtattgctgataaaagcatt
gcagactgtgtggaagctctactaggctgctatttaaccagctgtggtgagagagctgct
caacttttcctctgttctttggggctcaaggtgctcccagtaattaaaaggagtgattgg
gagaccacgttataccccagcaaggataatttcaacagtcagcaaaagaatctttcggtg
aactatgcttctatctctgtagccaatttacagtcttctttatataaagacttagaatat
ggctgtttgaagattccaccaaggtgcatgtttgatcatccagatgctgaaaaaacactg
aaccaccttatatcaggctttgaaaattttgaaaagaaaattaactacaacttcaagaat
aaagcttaccttctacaggcatttactcatgcctcctaccactacaataccatcactgat
tgttatcagcgcttggaattcctgggagatgcaattttggactacctcataactaagcac
ctttatgaagacccacggcagcactccccaggagttctaactgacctacgatctgctctt
gtcaataataccatctttgcatcattagctgttaagtatgactaccacaagtacttcaaa
gctgtttctcccgaactattccatgttattgatgattttgtgcagtttcaacttgagaag
aatgaaatgcaaggaatggattctgagcttagacgatctgaggaggatgaagaaaaagaa
gaagatatagaagtaccgaaggccatgggagatatatttgaatcacttgctggtgccatt
tatatggatagtggaatgtcattggaaatggtttggcaagtctactatccgatgatgcga
ccattaatagaaaaattttctgcaaatgtgccccgttctcctgttcgagaattgcttgaa
atggaaccagaaactgccaaatttagccctgcagagagaacctatgatgggaaggtccga
gtaactgtggaagtggtagggaagggaaagtttaaaggcgttggccgaagctacaggatt
gccaaatctgcagctgcaaggagagcactacgaagcctcaaagcaaatcaacctcaggtt
cccaacagctga
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integrated database retrieval system
