Monodelphis domestica (gray short-tailed opossum): 100020438
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Entry
100020438 CDS
T01031
Symbol
PBRM1
Name
(RefSeq) polybromo 1
KO
K11757
protein polybromo-1
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03082
ATP-dependent chromatin remodeling
mdo05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100020438 (PBRM1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100020438 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdo03021
]
100020438 (PBRM1)
03036 Chromosome and associated proteins [BR:
mdo03036
]
100020438 (PBRM1)
Transcription machinery [BR:
mdo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100020438 (PBRM1)
Chromosome and associated proteins [BR:
mdo03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
100020438 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
100020438
NCBI-ProteinID:
XP_001367622
Ensembl:
ENSMODG00000011318
LinkDB
All DBs
Position
6:276318564..276462844
Genome browser
AA seq
1624 aa
AA seq
DB search
MRRLAFRGAGCTLVNLKKLDSMGSKRRRATSPSSSISGDFDDGHHSVPTPGPSRKRRRLS
NLPTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQ
KLKMEEYDDVNLLTADFQLLFNNAKAYYKPDSPEFKAACKLWDLYLRTRNEFVQKGDADE
DEEEEDGHDNQGTMSEVSSPSYLKEILEQLLEAIAIATNPSGRLISELFQKLPSKVQYPD
YYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKI
FHLKKAEIEHVEMAKSSLRISNKRAVQGGRLSAITMALQYGSESDEDAALAAARYEEGES
EAESITSFMDVSNPLYQLYDTVRSCRNNQGQLIAEPFFHLPSKKKYPDYYQQIKMPISLQ
QIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKMQQVMQAKKKELARRD
DIEDGDSMISSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGTGRRLCDLFMVKPS
KKDYPDYYKIILEPMDLKIIEHNIRNDKYAAEEAMMEDMKLMFRNARHYNEEGSQVYNDA
HILEKMLRDKRKELGPLPEDDDMASPKLKLSRKSGISPKKSKYMTPMQQKLNEVYEAVKN
YTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPVDMEKIRSHMMANKYQDIDSMVEDFVMM
FNNACTYNEPESLIYKDALVLHKVLLETRRDIEGDEDSHVPNVTLLIQELIHNLFVSVMS
HQDDEGRCYSDSLAEIPSVDPSFPNKPPLTFDIIRKNVENNRYRRLDLFQEQMFDVLERA
RRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALSYTTKHLHNDVEKEKKEKLP
KEIEEDKQKREEEKREAEKSEDSSGGAGLSVLHRTYSQDCSFKNSMYHVGDYVYVEPAEA
NLQPHIVCIERLWEDSAGEKWLCGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKI
LGKCVVMFVKEYFKLCPETFRDEDVYVCESRYSAKTKSFKKIKLWTMPVSSVRFIPRDVP
LPVVRVASVFANTDKMDEEKHTETSEDSKGADTFLNLEKEKEDVPVEMSNGEPGCHYFEQ
LRYNDMWLKVGDCVFIKSHGLVRPRVGRIEKLWVRDGAAYFFGPIFIHPEETEHEPTKMF
YKKEVFLSNLEETCPMTCILGKCAVLSFKDFLSCRPTEIPENDVLLCESRYNESDKQMKK
FKGLKRFSLSAKVVDDEIYYFRKPIVPQKEPSPLLEKKIQLLEAKFAELEGGDDDIEEMG
EEEGEVIEAPSLPQLQTPLASDLDIMPYTPPQSTPKSAKGSSKKEGSKRKINMSGYILFS
SEMRAVIKAQHPDYSFGELSRLVGTEWRNLETTKKAEYEGMIGGYPPVLPPLQGPVDGIV
SMGSMQPLHPGVPPPHHLPPGMPGIPGIPPPGVMGQGVSPIVGPPAPGGSPYGQQMGILG
PPGQQAPPPYPGQNPAGQPVMQQPTTPMFVSPPPKTQRLLHSEAYLKYIEGLSAESNSIS
KWDQTLAARRRDVHLSKEQESRLPSHWLKSKGAHTTMADALWRLRDLMLRDTLNIRQAYN
IENV
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgaggagactggcttttcgaggcgctggttgtactctggtaaatctgaagaagttggat
tcaatgggctccaagagacgaagggctacatctccttccagcagtatcagtggggatttt
gatgatggtcaccactctgtaccaacaccaggcccaagcaggaaaaggagacgactttct
aatctcccaactgtagatccgattgctgtgtgccatgaactctacaataccataagagac
tacaaagatgagcagggcaggctcctgtgtgaactcttcatcagggcaccaaaaagaaga
aatcaaccagactattatgaagtagtttctcagcccatcgacttgatgaaaattcaacaa
aaactaaaaatggaagagtatgatgacgttaacctgctgactgctgattttcagctgctc
tttaacaacgccaaggcctattataagccagattctccggaatttaaagctgcctgtaaa
ctctgggatttgtacctccgaacaaggaatgaatttgtacagaaaggagatgcagatgag
gatgaagaagaggaggatgggcatgacaatcaaggaacaatgtctgaagtatcttctcca
agttacctgaaagagatccttgagcagcttcttgaagccatagctatagctacaaaccca
tcaggacgtctcataagtgagctttttcagaaacttccttcaaaagtgcaatatcctgac
tattatgcaataattaaggagcccatcgatcttaagacgattgctcagagaatacagaat
gggagttataaaagtatccatgcaatggcaaaggatatagatctcctggctaaaaatgcc
aaaacctacaatgaacctgggtctcaagtatttaaggatgcaaattcaattaaaaaaata
tttcatttgaaaaaggcagaaattgaacatgttgaaatggccaagtcaagccttcgaata
agtaataaaagagcagttcaagggggtcgtttatcagcaataaccatggcactccagtat
ggctcagaaagtgatgaagatgctgctttagctgctgctcgttatgaagagggggagtca
gaagcagaaagtattacttcatttatggatgtttcaaatcccctttatcaactctatgat
accgttaggagctgtcggaataatcagggacagctaatagcagaaccatttttccatttg
ccttcaaagaaaaaatacccagattattatcagcaaatcaaaatgcccatttccctgcag
cagataagaaccaagctaaagaaccaagaatatgaaactttagatcatttggagtgtgat
ctaaatttaatgtttgaaaatgccaaacgttataatgttcccaattcagccatctacaaa
cgagttctaaaaatgcaacaagttatgcaggcaaagaagaaggaacttgctaggagagac
gacattgaagacggtgacagtatgatctcttcagccacttctgatactgggagtgccaaa
agaaaaagtaaaaagaacataagaaaacagcgaatgaaaattttattcaacgttgttctt
gaagctcgagaaccaggtacaggcagaagactctgtgatctgtttatggttaagccatcc
aaaaaggactaccccgattattacaaaatcatcttggagccaatggatttaaagattatt
gaacataacatccgtaatgacaaatatgcagcagaagaggcaatgatggaagatatgaaa
ctgatgtttcgaaatgcaagacactataatgaagaaggctcacaggtgtataatgacgcc
catattctagagaagatgctcagagataagagaaaagagctgggcccactcccggaggat
gatgacatggcttctcccaaactcaagctaagtagaaagagtggcatttctcctaaaaaa
tccaaatatatgactccaatgcaacaaaaactcaatgaagtatatgaagcagtaaagaac
tacacagataagcggggccgccggctcagtgccatcttcctgaggctcccctccaggtca
gaactgccagactactacctgaccataaaaaagcctgttgacatggaaaagatccgaagc
cacatgatggctaacaagtaccaagacatagactccatggtggaagactttgtcatgatg
ttcaacaatgcttgcacatacaatgagcctgaatccctgatttacaaagatgctctagtc
ctgcacaaggtattgcttgaaactcgaagggacatagaaggagatgaagactctcatgtt
cctaatgtgacactgcttatccaggagcttatccacaatctttttgtgtctgtaatgagc
catcaggacgatgagggaagatgctacagtgactccttggctgaaatcccttctgtggat
cctagtttcccaaacaaaccccctctgacttttgacataattaggaagaatgttgagaat
aatcgctaccgcaggctggacttatttcaagagcagatgtttgatgtattggaaagggca
agaagaatgaatcggacggattcagagatatatgaagatgcagtagaacttcagcaattc
tttattaaaatccgtgatgaactctgcaagaatggagagatccttctttccccagcactt
agttatacaacaaagcacctccataatgatgtggagaaagagaaaaaggaaaagttacca
aaagaaatagaggaagataaacaaaaacgggaagaagaaaaaagagaagctgaaaagagt
gaggattcctctggaggagcaggcctctctgtcttacatcgaacatacagccaggactgt
agcttcaagaatagcatgtaccatgttggcgactatgtttatgtggaaccagcagaagcc
aaccttcagccacacatagtttgcattgaaagactgtgggaagattctgctggtgaaaaa
tggttgtgtggctgttggttttatcggccaaatgaaacattccaccttgctacacgaaaa
tttttggaaaaagaagtttttaagagtgactattacaacaaagtacctgttagcaaaatc
ttaggcaaatgtgtagtcatgtttgttaaggaatacttcaaactgtgtccagaaaccttt
cgagatgaagatgtttatgtctgtgaatcacggtattctgccaaaacaaagtctttcaag
aaaattaagctatggaccatgcctgtcagttccgttaggtttatccctcgtgatgtgcct
ctgcctgtggtgcgtgttgcttctgtgtttgcaaatacagacaaaatggatgaagaaaaa
cacactgaaacttcagaggacagtaaaggagcagacactttccttaacctggaaaaggaa
aaagaagatgttccagtagaaatgtctaatggtgagccaggatgccactactttgaacaa
cttcgatacaatgatatgtggctgaaggttggagattgtgttttcataaaatctcatggc
ttagtgaggcctcgagtgggcagaattgagaagctttgggtccgggacggtgctgcctat
ttctttggtcccatcttcattcaccctgaagaaacagaacatgagccaacaaaaatgttc
tacaaaaaagaagtgtttctgagcaatttggaagaaacctgtcctatgacatgtatcctg
ggaaagtgtgctgtgttgtcattcaaggacttcctgtcctgcaggccaactgaaatacca
gaaaatgatgttctgctttgtgagagccgctataatgagagtgacaaacaaatgaagaaa
ttcaaagggttgaagaggttttcactctctgcaaaagtggtagatgatgaaatctactat
tttaggaaacctatagttccacaaaaggagccctcaccattattggagaagaagattcag
ttgctagaagcaaaatttgctgagttggaaggtggagatgatgatattgaagaaatggga
gaagaggagggtgaagtcattgaagccccatctttaccacagcttcagactccactggcc
agtgatctggacattatgccctacactccccctcagtcaactcctaagtctgctaagggc
agctctaagaaggaaggctccaaaaggaagatcaacatgagtggctacatcctctttagc
agtgagatgagagctgtcattaaggcccagcatccagactactcctttggagagctcagt
aggcttgtaggaacagagtggagaaacttagagaccaccaagaaagcagaatatgaaggc
atgataggtggctatccgccagtcctgccacctttgcaggggccagttgatggcattgtt
agcatgggcagcatgcagccacttcaccctggggtgcccccaccccaccaccttccgcca
ggtatgccaggcatcccaggcatcccaccaccgggtgtgatgggccaaggagtgtccccc
attgtaggccctccagcaccaggaggaagtccttacggacaacaaatgggaatcctgggg
cccccgggccagcaagcaccacctccgtatcctggtcagaatccagcaggccagcctgtc
atgcagcagcctacaacaccaatgttcgtctctcccccaccaaagacacaacggcttctg
cactcagaggcctacctgaaatacattgaggggctcagcgccgaatcaaacagtattagc
aagtgggaccagacccttgcagcccgaagacgagatgttcatctatcaaaagaacaagaa
agccgccttccttcacactggctgaaaagtaaaggggcccacactaccatggcagatgcc
ctctggcgccttcgtgatttgatgcttcgagatacccttaacattcgccaagcatacaac
atagaaaatgtttaa
DBGET
integrated database retrieval system
