Monodelphis domestica (gray short-tailed opossum): 100021592
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Entry
100021592 CDS
T01031
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA decapping 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100021592 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100021592 (EDC4)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100021592 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
100021592 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
Sey1_3HB
Motif
Other DBs
NCBI-GeneID:
100021592
NCBI-ProteinID:
XP_001373701
UniProt:
F7G5P8
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All DBs
Position
1:685756127..685774502
Genome browser
AA seq
1393 aa
AA seq
DB search
MASSCTSIDIEDATQHLRDILKLDRPPGGSGTESQRTSSSYNGDLNGLLVPDPLSSGDGT
VLAKPSHRLAPLASLEEKQVICLSGDDSSTCIGISAKEVEIVASSDSNISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRGASNGSAMVRVISVSTAERTLLKGFTGSV
ADLAFAHLNSPQLACLDESGSLFVWRLAMENNKIQEEIVVNIKRSEGTPLNHFRRIIWCP
YIPEENEESSEEGSQTLALLHEDRAEVWDLDILRANNSSWPVDVSHVKEGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFCPDMFSSVSVLPSLKACLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRAYFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEEGDSLSTEGSHGAGTVESAAGVLIKLFCVHTKALQDVQIRFQPQQSPDVVAPLPSHS
SREDFGFGEHLPELNSESLASGQGSGQGSQPDLRRIADLPVPSDFLSLTNEAKPKLMTPD
AFMTPSASLQQITVSPGSSGSSLTAVTALNTTSATDTTMPRPPEELTLSPKLQLDSSLTL
SSSSSSLQASPRGHSVLIPGLSDKLATKGPSQVPQGNPSLSLELQEVEPLVVPQASPTRA
RSPDVISSASTALSQDIPEIASEALSRGFGTTAPEGLEPDSMASAASALHLLSPRPRPGP
EHGPQHSLDGSPGEGERRSTPSLLETALSQETGASDSKAWPAAPDITRETRNSLADSPRD
DVQEKHKGSSYHRHAYHLLQQDSQDASAEQSDHDDEVASLASTSGGFVAKATAPRLPVKD
WKTKGSPRASPKLKRKGKKDDGDLAQGPRLVEHQAAEPPEEWLAVVRGQQRELAELRQSH
AELLQRLTDQLDSVQSSVMGHMERVLESRQEHEQRRLERALAEGQQRSGQLQEHLSQQLS
QALSSAVAGRLERTVREEMKKTVPQCVSKSLEPVTSQLSGTVSAKLTAVEGTLKENVTKL
VKSKNLTDTIARAAADTLQGPMQAAYREAFQSIVLPTFEKSCQAMFQQINDSFKLGTQEY
LQQLENHMKSRKAREQEAREPVLAQLRGLVGTLQSATEQMAATVSSSVRAEVQHQLHIAV
SNMQESILSQVQRIIKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPIPAAHLDCQAQQAHI
LQMLQQGHLNQAFQQALTAADLNLVLFVCETVDPQQVFGQPPCPLSQPVLLSLIQQLSSD
LGTRTELKFSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLSKAARRL
TIMLQGLAVPGLN
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtcctgcaccagtatcgacatcgaggacgccacgcagcatctgcgggacatc
ctaaagctggaccgtccgcctggaggctcaggcacagagagccagcgaacatccagctcc
tataatggagatctgaatggacttctggtgccagaccccctttcttctggtgatggaact
gtgctggccaagccgagtcacaggctagcacccttggccagcctagaggagaagcaggtc
atttgcctttctggagatgatagctcaacttgcattgggatctcagcaaaagaggtggaa
atagtggctagcagtgactctaacatctcaagcaaggctcgagggagcaacaaggtaaaa
atccagccagtggccaagtatgactgggaacagaaatattattatggcaacctgatcgct
gtgtctaattccttcttggcatatgccatccgaggtgccagcaatggctcagccatggtg
cgggtgatcagtgtcagcacagcagaacgcacactgctgaagggcttcacaggaagtgtg
gccgacttagccttcgctcacctcaactccccccagttggcctgcctggatgaatctggc
agcctttttgtgtggcgcctggccatggagaacaacaagattcaagaggagattgtggtg
aacattaaacgttcagagggcacaccattgaatcacttccgaaggatcatctggtgtcct
tatatcccggaggaaaatgaggaaagcagtgaggagggcagccagactctggccctgctg
catgaagacagggctgaggtgtgggacctggacattctccgagccaacaatagctcctgg
cctgtggatgtcagccatgtcaaggaaggcttcatagtggttaagggccatagcacgtgc
ctgagtgaaggagctctctcccctgatgggactgttctagccactgcaagtcatgatggc
tttgtcaagttctggcaaatctatatagagggccaagatgagccaaggtgtctccatgaa
tggaagcctcatgatggcaggcccctctcctgccttcttttctgtgacaaccacaagaaa
caagaccctgaagtccccttctggaggttcctcatcacaggagctgaccaaaacagggaa
ctgaagatgtggtgtacagtatcatggacctgcttgcagaccatccgcttttgtccagat
atgtttagttcagtgagtgtgcttcccagtctcaaggcctgtctggatctttcggctgaa
taccttatcctcagtgatgtgcagagaaaggtgctgtatgtgatggagctgctgcaaaac
caggaagagggcagagcttacttcagttctatttctgagttcctgcttacccaccctgtg
ctgagctttggaattcaggttgtgagccgctgtcggcttcggcacacggaggttctccca
gctgaggaggagggggacagcttgagcacagagggctcccatggtgctggcacagtggag
tcagcagctggtgtacttatcaagctcttctgtgtccacaccaaggccctgcaggatgtt
cagattcgcttccagccccagcaaagccctgatgtggtagccccgctcccttctcactca
tcccgggaagattttggatttggcgagcacctgccagaattgaactcggaaagtctggcc
tctggccagggttctggccagggctctcagcctgaccttcggcgaattgctgacctgcct
gtcccttcggactttctcagcttgactaatgaggccaagcccaagctcatgactcctgat
gccttcatgaccccgagcgcctctctgcagcagattacagtgtccccaggaagcagtggg
agctctttaacagctgtgacagccttgaataccacctcagccacagatacaaccatgcct
aggccacctgaggagctgaccctgagccccaagctgcagctagacagcagtctgaccctg
agcagcagcagtagcagccttcaggctagtccccgcggccacagcgtcctcatcccaggc
ctctctgataaactagccactaaggggcccagccaggtcccacaagggaacccatcactg
tccctggagctgcaggaggtagagcccttggtggtgccacaggcctctccgacccgggcc
cgctcccccgacgtcatctcctcagcctccacagccctgtcccaggacatccctgagatt
gcctcagaggctctatcccgaggctttggcaccactgctcctgagggccttgagcctgac
agcatggcatctgccgcctcggccctccacctgctatccccccgaccccggcctggccct
gaacatggcccccagcacagtctggatgggagtcctggggagggggagaggcggagcaca
ccttccctactggagacggcgctgagccaggagactggtgcttctgacagtaaggcctgg
cctgctgcacctgatatcacccgggaaacccgcaacagcctggctgacagtcccagggat
gatgttcaggagaaacacaagggctcttcctaccaccggcacgcctaccatctgctacaa
caagatagtcaggatgccagcgctgagcagagtgaccacgatgatgaggtggccagcttg
gcctcaacctcaggtggctttgttgccaaagcaacagccccacgactgccagtgaaggac
tggaaaaccaaggggtctcccagggcctcacccaagctgaagagaaagggcaagaaggat
gatggagatttggcccagggtccccgactagtagaacaccaggcagcagaacctcctgaa
gaatggctggctgtggttcgaggacagcagcgggagcttgccgagctccgacagagtcat
gcagagctactgcagcggctaacagaccagctggactcagtgcagagctcagtcatgggc
cacatggagagagttcttgagtctcgacaagaacatgagcagagacggttagagcgggcc
ctggctgaggggcagcagcgtagtgggcagctgcaggagcatttgtcacagcagttgtcc
caggccctgtcctcagcggtagcaggccgactggagcgcacagttagagaggagatgaag
aaaacggttccccagtgtgtctccaaaagcttggagccagtgacaagccaactcagtggt
actgtgtcggccaaattgacagcagtggaaggcaccctaaaggagaatgtcaccaagctg
gtcaagtccaagaacctgaccgatacgattgcccgtgctgctgcagatacactccaggga
cctatgcaggctgcttaccgagaggccttccagagcattgtgctgcccacttttgagaag
agctgccaggccatgttccagcagatcaatgacagcttcaagcttggtacccaggaatac
ctgcagcagttagagaaccacatgaagagtcggaaggcaagagaacaggaagcacgagag
ccggtgctagctcagcttcgaggactggtgggcaccttgcagagtgccacagaacagatg
gcagccactgtgagcagcagcgtgcgggctgaggtccagcaccaactccacattgctgtg
agcaacatgcaggagtcaatcctgtcccaggtgcagcgtatcatcaagggggaagtgagt
ctggccatgaaggagcaacaggcagcagttacttccagcatcatgcaggccatgcgttct
gctgctggcacacccatcccagctgcccacctagactgccaggcccagcaggcacatatc
ttgcagatgttgcagcagggccacctcaaccaggctttccaacaggccctgacagcagct
gacctgaacctggtgctctttgtatgtgagactgtggatccccagcaggtgtttggccag
ccaccttgtcctctgtcccagcctgtcctgctttctctcatccagcagctctcctctgac
ctgggaacccgcacagaactcaaattcagctacttggaggaagctgtaatgcacctggac
cacagtgaccctatcaccagggaccacatgggctcagtcatggcccaggtgcggcagaag
ttattccagtttctacaggctgagcctcacaactcactcagcaaggctgccaggcgcctc
accatcatgttgcagggcctagctgtccctggtctcaactag
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integrated database retrieval system
