Monodelphis domestica (gray short-tailed opossum): 100022156
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Entry
100022156 CDS
T01031
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03030
DNA replication
mdo03410
Base excision repair
mdo03420
Nucleotide excision repair
mdo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100022156 (RFC1)
03410 Base excision repair
100022156 (RFC1)
03420 Nucleotide excision repair
100022156 (RFC1)
03430 Mismatch repair
100022156 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdo03032
]
100022156 (RFC1)
03400 DNA repair and recombination proteins [BR:
mdo03400
]
100022156 (RFC1)
DNA replication proteins [BR:
mdo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100022156 (RFC1)
DNA repair and recombination proteins [BR:
mdo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100022156 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_5
PTCB-BRCT
AAA_22
AAA_14
BRCT_2
Rad17
AAA_16
RuvB_N
AAA_30
AAA_33
AAA_18
AAA_7
AAA_17
nSTAND3
TCAD2
NTPase_1
RNA_helicase
NPHP3_N
AAA_19
Motif
Other DBs
NCBI-GeneID:
100022156
NCBI-ProteinID:
XP_007496617
Ensembl:
ENSMODG00000020548
LinkDB
All DBs
Position
5:185056287..185178669
Genome browser
AA seq
1149 aa
AA seq
DB search
MDIRKFFGVVPSGKKHVNETVKKNENTKTVEGPLKAKKGTKEIKVKNSSKEDDVKQKRAN
KKKRIIYDSDSEPEETVQVKNVQNQSEKLPMSSKPQKIPRQDPVTYVSETDEEDEFINKK
SHKPKENGLSSSSHTGISNVKRDSGKKPPIKNKPLSPIKLTPTSVLDYFGTGSVQRSGKK
LVASKRREPSQNTNDSRLTDEAIAEQLQIEENSELERQLHEDEEFARTLAMLDEEPKNKK
ARRNSEERETFSTDRITSSKSEKHKVKTSNLSYESKNYNLNKQTKSEDSRGSQPHSKSSP
HKVPHKTEEEPSALKVSSKLALLKKREESSNKKEESTESRKKENEVVLKEERKSPKKNKN
SPSKTESVSPEDTEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLE
SIERDEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQSKSDKALALGTKIIDEDGLLDLI
RTLPGKKSKYEIAVEAEVRKEKSKLEKTPQKTDQGKRKTSPNKKDSESKRNKLTPPKVSS
MNSFKTETSEFQKGLDFKHVVGEKNVLKPEKYIADQSKDKAEVLLWVDKYKPTSLKAIIG
QQGDQSCANKLLRWLRNWPKNMSEDKKHVKVNKFGGKDDGSSFKAALLSGPPGVGKTTTA
SLVCEELGYSYVELNASDTRSKSSLKEIVAESLNNTSIKDFCSSAAHSGGTKHVLIMDEV
DGMAGTEDRGGIQELIGLIKHTKIPIICMCNDRNHPKMRSLVHYCFDLRFQRPRIEQIKG
AMMSVAFKEGLKIPPPAMNEIILAANHDIRQVLHNLSMWCAENKALTYDQAKTDSSRAKK
DIKLGPFDVARKVFTAGEETAHMSLVDKSDLFFHDYSIAPLFVQENYLHVKPAAAGGDMK
KHLMLLSRAADSICDGDLVDRQIRSRQNWSLLPTQAIYSSVLPGELMRGYMTQFPSFPSW
LGKFSSTGKHDRIVQELALHMSLETHSSKRTVNLDYLSHMRDALILPLTMRGTEGVQNVV
ELMDTYHLMREDFENIMEISIWGGKPSSFSKLDPKVKAAFTRGYNKEVHLTPYSIQITKM
SKQIGIPSLSSDYNDELNEEESQSDEKDQDGIETDAMIKQKRTQSSKASKLEKDTENKKA
KGKSSKKPK
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaaattctttggggtcgttccaagtggaaagaaacatgttaatgagaca
gtgaaaaagaatgagaatacaaaaactgttgaaggaccattaaaagcaaaaaaaggaaca
aaggagatcaaggtgaaaaattcttccaaagaagatgatgtaaaacaaaagcgtgcaaac
aagaaaaagagaattatctatgattcagactcggagccagaggagacagtacaggttaaa
aatgttcaaaaccaatcagagaaattgccgatgtcttccaaacctcagaaaattccaagg
caagatcctgttacatatgtttcagaaacagatgaagaagatgaatttattaataagaaa
tctcataagccaaaagaaaatggattatcttcaagtagtcacactggaatatcaaatgtg
aagagagatagtggaaaaaaacctccaattaagaataagcctttatcacctatcaaactt
acacccacatcagtgcttgattactttggaactggaagtgttcaaagatcagggaagaag
ctagttgcaagcaaaagaagagaaccttcacaaaatacaaatgattccagattaactgat
gaagctattgctgagcaactacaaattgaagagaattcagagcttgagaggcaactgcat
gaggatgaggaatttgccagaacactggcaatgttggatgaagaacccaagaataaaaag
gcccgaaggaattcagaagagagagagacattttcaactgaccgaattacttcaagcaaa
tcagaaaaacataaagtaaaaacatcaaatttatcatatgagagcaagaactacaatttg
aacaagcaaactaaaagtgaagattcaagaggttctcaaccacattcaaagtcatcacct
cataaagtacctcacaaaacagaggaagaaccctcagcgttgaaagttagctctaagctg
gcactcttgaaaaaaagagaagagagtagtaacaaaaaagaggaatccacagagtccaga
aaaaaagaaaatgaagttgtacttaaagaagagagaaaatctcctaagaaaaataaaaat
tctccatccaagacagagtctgtaagtcctgaagatactgaaaaaaaacgtactaattac
caggcttatcgaagctacctgaatcgagagggtcccaaagctctaggctctaaggagatc
ccaaaaggagctgaaaattgcctggaaggtctaacatttgtaatcacaggagtcctagaa
tctattgaacgagatgaagccaagtctctaattgagcggtatgggggaaaagtaactgga
aatgtcagcaaaaaaacaagttaccttgttatgggacgtgatagtgggcaatccaaaagt
gataaggctttggctttgggaacaaaaattattgatgaagatggcctattggatctcatt
cgaactttgcctggcaagaagtccaaatatgaaatagcagttgaagctgaggtaaggaag
gaaaaatcaaaattggagaaaacaccacaaaaaactgatcaaggaaaaagaaaaactagc
ccaaataagaaggactctgaatctaaaaggaacaaattaacacccccaaaagtcagttct
atgaactcattcaaaacagaaaccagtgaatttcaaaagggcctggacttcaagcatgtg
gttggagagaagaatgtcttaaaaccagagaaatatattgccgaccaaagcaaagacaaa
gctgaggttttgctttgggtggataaatataagcctacctctcttaaggccataattgga
cagcaaggtgaccagagttgtgctaacaaactcttacgatggctccgcaactggcccaag
aacatgtctgaagataagaaacatgttaaagttaataaatttggtggcaaagatgatggt
tccagttttaaagcagccctgctctctggtccaccaggagttggcaaaaccaccactgct
tctctggtgtgtgaggaattgggttatagttatgtggaactgaatgcaagtgacacccgg
agcaaaagcagtttgaaagaaattgttgctgagtcactgaataacactagcatcaaagac
ttctgttcaagtgcagctcattcaggaggcacaaaacatgttctgataatggatgaagta
gatggaatggcaggcactgaagatagaggaggaattcaggaactaattggcctgatcaaa
cacacaaaaatacccattatttgtatgtgtaatgatcgaaaccatccaaagatgcgttcc
ttagtccattattgttttgatcttcggtttcaaagacctcggattgaacagattaagggt
gctatgatgtctgttgcatttaaagagggtttaaagatccctcctccagctatgaatgaa
attattttggcagcaaatcatgatattcgacaggttttacacaatcttagcatgtggtgt
gcagaaaataaagccctaacctatgaccaagctaaaactgattccagcagggctaaaaaa
gatatcaaactgggcccatttgatgttgcccggaaagtgtttactgctggggaagagact
gctcatatgtcgcttgtggacaaatctgatctcttcttccatgattactccatagcacct
ctttttgtccaggaaaattacttacatgtaaaacctgctgctgcaggaggggatatgaaa
aaacacttgatgcttttgagcagagcagcagatagtatatgtgatggtgacttagtggat
cgacagattcggagtaggcaaaactggagccttctgccaacacaggccatttattctagt
gttcttcctggagagttgatgagaggttacatgactcagtttccttctttcccaagttgg
ttaggaaaattctcatctacaggcaaacatgatcgcattgttcaagaattagcattacac
atgagtcttgaaactcactccagcaaaagaactgtcaacctggattacctctcacacatg
cgggatgcacttattcttcctttgacaatgcgtggaacagaaggtgtacagaatgttgtt
gaactcatggatacatatcatctcatgagagaagactttgaaaatatcatggaaataagt
atttggggaggcaaaccgagttccttttctaaattggatcccaaggtgaaggcagccttc
acgcgaggctacaataaagaggtgcacctcacaccatattcaattcagataacaaagatg
tctaaacaaattggaatcccttctttgagttcagattataatgatgagttaaatgaagaa
gaatcccagtctgatgaaaaggaccaagatggtattgaaactgatgcgatgatcaagcag
aaaaggacgcaatcttcaaaggcttcaaaactggaaaaagatacagagaataaaaaagca
aaggggaaaagttcaaaaaaacccaagtaa
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integrated database retrieval system
