Monodelphis domestica (gray short-tailed opossum): 100024097
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Entry
100024097 CDS
T01031
Symbol
SMG7
Name
(RefSeq) SMG7, nonsense mediated mRNA decay factor
KO
K14409
protein SMG7
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100024097 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100024097 (SMG7)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100024097 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
100024097 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
100024097
NCBI-ProteinID:
XP_007480998
Ensembl:
ENSMODG00000007139
LinkDB
All DBs
Position
2:78506053..78636987
Genome browser
AA seq
1190 aa
AA seq
DB search
MLQTLHYGGEQLWQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVE
QDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL
PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRH
AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR
DEVKTRWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKAFNSQQLVHV
TVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFISFLGILCKCPLQNEYQEESCS
AYPLPAVKVSMDWLKLRPSVFQETVVDERQYIWPWLISLLNSFQPHEEDLSSINATPLPE
EFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQWRIRQQRLISIGKWIADNQPRLIQCE
NEVGKLLFITEIPELLLEDPSEAKENLVLQEASLTESLPADGSPGLKSVLSTGRSVSNSC
DTTEKPMVTFKENIKPREVNREQGRSYPPKEVRRDYSKSIAVTKSDGKKDNNKRKNETKK
CTLEKLQEAGKQSVAVQVKSQTELRKTPVSEARKTPVTQTPSQASNSQFIPIHHPGAFPP
LPSRPGFPPPAYVIPPPVAFSMGSGYTFPAGVSVPGTYLQPTAHSPAGNQVQAGKQSHIP
YSQQRPSGPGPMNQGPQQSQPPSQQSLSSLPAQPTAQSTSQLQVQALAQQQQSPTKAVQA
LGKSPPHHSGFQQYQADASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDSLKLFEPSLQPP
VMQQQPLEKKMKPFTMEPYNQNPSEVKVPEFYWDPTYNMADNRAVMTQQASVDRRGKRPP
GVFPSEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASL
PGRSLFKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNLTTSGKAEINP
SLTHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVPFSN
FGPIGTPDNRDRRIADRWKTDKPAMGGFGFDYLPATSSSSETSWHQASTPSGTWTGHGPS
MEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGTMNPPH
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaaaccctccactatggtggtgaacaactttggcaggcagaagtcctgaaggct
gacatgacagattccaagctgggtccagctgaggtctggacatctaggcaggctctgcag
gacctgtaccagaaaatgctagttactgatctggagtatgctttagacaagaaagtggaa
caggatctctggaatcatgcctttaagaatcagatcacaacactacagggccaggcaaag
aatcgagcaaaccctaatcggagtgaagttcaagcaaatctttctctgtttttagaggca
gctagtggcttctatacgcagttgttacaggagctgtgcacagtgtttaatgtagattta
ccttgccgtgtgaagtcttcccagttgggaattatcagcaataaacagacgcataccagc
gccatagtgaagccacagtctagctcctgctcatatatatgccagcactgcctcgtccac
cttggagacattgctcgctatagaaaccagaccagccaggcagagtcctactataggcat
gcagctcagcttgtcccctccaatggtcagccttataatcagttggctattttagcttct
tccaaaggagaccatctgaccacaattttctactactgcagaagcatcgctgtgaagttt
cctttcccagctgcctccactaatcttcaaaaagcactttctaaagcactggaaagccgg
gatgaggtgaaaactagatggggtgtttctgacttcatcaaagcctttattaaattccat
ggtcatgtgtacctgagcaagagtttagaaaagctgagccctcttcgagagaaactggaa
gaacagtttaagagactgctattccaaaaagcattcaactctcagcagctagttcacgtc
actgtcattaacctgtttcaacttcatcaccttcgcgactttagcaatgaaactgaacaa
cacagttatagccaggatgaacagctgtgttggacacagctactggccctttttatctct
tttcttggcatcctgtgcaagtgtcctctccagaatgagtatcaggaggagtcatgcagt
gcatatccccttcctgctgtcaaggtctcaatggactggctgaaacttagacctagtgtc
tttcaggagactgtggtggatgaaagacaatacatttggccctggctgatctctcttcta
aacagtttccagccccatgaagaagatctctccagcattaatgctactccacttccagaa
gagtttgagttacagggattcttagcattaagaccttctttcaggaacttagatttctcc
aaaggccaccaggggattacaggagacaaagagggacaacagtggcgaattcgccaacaa
cgcttgatttctataggcaaatggattgctgataatcagccaaggctgattcagtgtgaa
aatgaggtagggaaattgttgtttatcacagagattccagagttactactagaagacccc
agtgaagccaaagagaacctggtccttcaagaagcctccctcacagagtccctgcctgcg
gatgggagtccgggcctaaaatctgtgctctctacgggcagaagtgtgagcaacagctgc
gacaccacggagaagcccatggtcaccttcaaggagaacattaagcctcgagaggtgaac
agagagcaaggaagaagctacccacccaaagaggtgagaagggactatagcaaaagcata
gcagttactaagagtgatggaaagaaggacaacaacaagaggaaaaatgagaccaagaaa
tgcaccttagagaagttgcaggaagcgggaaagcagagtgtggcggtgcaggtgaaatct
cagactgagttaaggaagaccccagtgtctgaagctagaaaaacacctgtaactcagacc
ccaagtcaggcaagcaattcccagttcatccctatacatcacccaggagccttccctccc
cttcccagccgaccagggttcccacccccagcatatgttatcccccctcctgtggcattc
tctatgggctcaggttacaccttcccagctggtgtttctgtcccgggaacctatcttcag
cctacagctcactctccagcaggaaaccaggtgcaagctgggaaacagtcccacattcct
tacagccagcaaaggccctctggaccagggccaatgaaccagggacctcaacagtcacag
ccaccttctcaacaatccctttcatctttaccagctcagccaacagcacagtctacaagc
caattgcaggtccaggcactggctcagcaacaacagtctcctacaaaggctgtgcaggct
ttggggaaaagccctcctcatcactctggattccagcagtatcaggcagatgcttccaaa
cagctgtggaatccacctcaggtccaaggcccattagggaagattatgcctgtgaagcag
ccctactaccttcagacccaggactccctaaaactgtttgagccgtccttgcaacctcct
gtaatgcaacagcagcctctagagaaaaaaatgaagccttttaccatggagccatataac
cagaatccctcagaagtcaaggtcccagaattctactgggatccaacttataacatggct
gataatcgagcagtgatgacccagcaagcaagtgtggaccgtcggggcaaaaggccacca
ggtgtctttccctctgagcaggatcccgtccccaggatgccgtttgaggaccccaagagc
tcccctctgcttcctccggacctgttaaagagtctggctgccttggaggaagaggaagag
ctgattttttctaaccctcctgatctttacccagctctgctggggcctctcgcctctctt
cctggacgaagcctctttaagtccttgttggagaaaccctcagaactcatgtctcattct
tcttctttcctatccctcactggcttctctctcaatcaggaaagatacccaaataacagc
atgtttaacgaagtatatggcaaaaacctaactaccagtggaaaagcagagattaatccc
tcattgactcaccaagaaacatcattatactctctttttgaagggactccctggtctcca
tctcttcctgccagttcagatcattcaacaccagccagccagtctcctcactcttctaat
ccaagtagcctgccaagttctcctccaactcacaaccataattctgttccattctccaat
tttgggcccattgggactcctgataatagagataggaggattgcagatcgttggaaaacc
gataaaccagctatgggtggatttggctttgattatctcccagcaacatcctcatcctct
gagactagctggcatcaggccagtactccaagtggtacctggacaggccatggcccttcc
atggaggattcctctgctgtccttatggaaagcctaaagtctatctggtccagttccatg
atgcatcctggaccttcggccctggagcagctgttgatgcagcagaaacaaaagcagcag
cgtggacaaggcaccatgaacccaccgcactga
DBGET
integrated database retrieval system
