Monodelphis domestica (gray short-tailed opossum): 100024525
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Entry
100024525 CDS
T01031
Symbol
SF3B3
Name
(RefSeq) splicing factor 3b subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100024525 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdo03021
]
100024525 (SF3B3)
03041 Spliceosome [BR:
mdo03041
]
100024525 (SF3B3)
03036 Chromosome and associated proteins [BR:
mdo03036
]
100024525 (SF3B3)
Transcription machinery [BR:
mdo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100024525 (SF3B3)
Spliceosome [BR:
mdo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100024525 (SF3B3)
Complex B
100024525 (SF3B3)
Complex C
U2 SnRNP specific factors
100024525 (SF3B3)
Chromosome and associated proteins [BR:
mdo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
100024525 (SF3B3)
TFTC complex
100024525 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
100024525
NCBI-ProteinID:
XP_016285524
Ensembl:
ENSMODG00000014363
LinkDB
All DBs
Position
1:708250318..708289685
Genome browser
AA seq
1178 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSREKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEVKLFHPLVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRKELDD
PERGKIFVCSATPKNKSMFFFLGQTGQGDIFQITLETDENMGVTEIRLKYFDTVPVAAAM
CVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVD
ELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAV
WTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQV
YPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTE
RKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPES
LCIVEMGGAEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPV
KLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAIST
NTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQM
AEEMVEAAGEDERELAAEMAAAFLNENLPESIFGAPKAGNGQWASVVRVMNPIQGNTLDL
VQLEQNEAAFSVAVCRFSNTGDDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEF
LHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHR
VIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLP
PNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVY
TTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLC
EQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTRYAF
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaacttgaccttgcagcgagccactggtatcagctttgccattcatggc
aacttctcaggaaccaaacaacaggagattgttgtgtctcgagagaagatcttggagctg
cttcgcccagatcctaacactgggaaggtgcacaccctattgactgtagaagtgtttggt
gttatcagatctctcatggccttcaggttgacaggtggtacaaaagattatattgtggtt
ggcagtgactcaggccgaattgtcatcctggagtaccagccatccaagaacatgtttgag
aagatccatcaagaaacttttggcaaaagtggttgtcgccgaattgtacctggacaattc
ttagctgttgatcccaaaggccgagctgtcatgattagtgccatcgagaagcaaaaattg
gtttatattctgaacagagacgctgctgcccgccttaccatttcttcacctttggaagcc
cacaaggcgaatactttggtctatcatgtggtaggagtagatgttggatttgaaaatccc
atgttcgcctgtctggagatggattatgaggtaaagttgtttcatcccttagtaccagga
ggctcagatggtccaagtggtgtattgatctgttctgaaaactatatcacctataagaac
tttggtgatcagcctgatatcagatgtcccattcctaggaggcggaaagaattggatgac
cctgagagaggaaagatttttgtctgctctgccacccctaagaacaaatctatgttcttc
tttttgggccaaaccgggcaaggagacattttccaaatcactttggagacagacgaaaac
atgggcgttactgagatccgactgaagtattttgatactgttcctgtggctgctgctatg
tgtgtcctcaaaacaggctttctctttgtggcatcagaatttggaaatcactacctgtat
caaattgcccatcttggtgatgatgatgaagaaccagagttctcatctgccatgcccctg
gaagaaggagacacattctttttccagcctcggcctctgaagaacttagtattggttgat
gaactggatagtctctctcctattctgttttgtcagattgcggatctggccaatgaagac
accccacagctatatgtagcttgtggcaggggaccacgatcttctctaagggttttgagg
catggactagaggtgtcagaaatggctgtctcagagttgcctggcaaccccaatgctgtc
tggactgtacggcggcatattgaagatgaatttgatgcgtacatcattgtgtctttcgtg
aatgccaccctggtactatctattggagagactgtagaagaagtgacagactccggtttc
ctgggtaccactccaaccttgtcctgttccttgttaggggatgatgctttggtgcaggta
tatccagatggcatccggcacatccgagcagataagagagtaaatgagtggaagacccca
ggaaagaaaactattgtgaagtgtgcagtaaaccagcggcaggtggtgatcgccctgaca
ggaggagagctagtctactttgagatggatccctcaggacagctgaatgagtacacggag
cgaaaggagatgtctgcagatgtggtatgcatgagtttggccaatgtacctcctggggag
caacgttctcgtttcctggctgtgggcctggtagacaatactgttcggatcatctctttg
gacccttcggactgcctccagccactgagcatgcaagccctccctgcccagccagaatca
ctctgtattgtcgagatgggtggagctgaaaagcaagatgagctgggagaaaggggctcc
attggcttcctctatctaaacattgggcttcagaatggtgtgctcttaaggactgttcta
gaccccgtcactggtgatctatctgacacccgtacaagatacctgggttctcgccctgtg
aagcttttccgagtccggatgcagggccaggaagcggttttggctatgtcaagccgctct
tggctgagctattcttaccagtctcgatttcacttgactcccctgtcctatgagaccctg
gagtttgcatctggattcgcatctgaacagtgtcctgagggcattgtggccatctccacc
aacactttaaggattttagccttggagaagctaggtgctgtcttcaaccaggtagcattc
cccctacagtatactccaaggaagtttgtcatccaccctgagagcaacaacctcatcatc
attgagactgatcacaatgcctacactgaggccacaaaagcacagaggaaacagcagatg
gcagaggaaatggttgaagcagcaggggaagatgagagggaattggcagctgagatggct
gctgccttcttgaatgagaatctcccagaatccatctttggagcccccaaagcgggcaat
ggacagtgggcttctgttgtccgagtaatgaatcccatacagggaaacaccttggatctt
gtccagctggagcagaatgaagctgcttttagtgtggcagtgtgtaggttctcaaatact
ggtgatgattggtatgtgctggtgggtgtagccaaggacctcattctgaaccctcggtct
gtggctggaggctttgtttatacctacaaacttgtgaacagtggagagaaactggagttc
ttgcacaagactccagtggaagaggtccctgcagccattgcccccttccagggcagggta
ttgataggcgtgggaaagctgttgcgcgtctatgaccttgggaaaaagaagttactccgg
aaatgtgagaataagcatattgcaaactacatttctgggatccagacaattggacaccgg
gtcatagtgtctgatgtccaggaaagtttcatctgggtcaggtacaagcgcaacgaaaat
cagctcatcatctttgctgatgacacttatccccgttgggtcacgacagccagcctcttg
gactatgatactgtggctggggcagataaatttggcaacatttgtgtggtgaggctcccc
cccaataccaatgatgaggtggatgaagacccaacaggaaacaaggctctgtgggaccgg
ggactgctcaatggtgcctcgcaaaaggcagaagtcatcatgaattatcatgtaggggaa
acagtgctttccttacagaagaccacactgatcccaggaggctcagaatcccttgtctat
accactttgtcgggcgggattgggatccttgttcctttcacctcccatgaggatcatgac
tttttccaacatgtggagatgcacctacgctcggagcatccccctctctgcgggagggac
catctcagcttccgttcctactacttccctgtgaagaatgtgattgatggtgacctttgt
gaacagttcaactcaatggagcccaacaaacagaagaatgtgtcagaagagttagacagg
actccccctgaggtctcaaagaaactagaagatatccggacccgctatgccttctga
DBGET
integrated database retrieval system
