Monodelphis domestica (gray short-tailed opossum): 100024540
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Entry
100024540 CDS
T01031
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100024540 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100024540 (PARN)
Enzymes [BR:
mdo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100024540 (PARN)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100024540 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
PTHB1_pf
Motif
Other DBs
NCBI-GeneID:
100024540
NCBI-ProteinID:
XP_007498687
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All DBs
Position
6:complement(108880360..109105625)
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AA seq
638 aa
AA seq
DB search
MEMIRSNFKNNLHKVYQAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYHKLKKH
SMDFLLFQFGLCTFKYDSTDSKYIMKSFNFYVFPKPFSRTSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYISPNASKCPVIIPEDQKKF
IDKVVEKIEDLIQNEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPEDLSEFKEVTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKEAPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVEKKHVDKQNKRKWTENSWKEVERKRLK
TQCTSYSPQSRYYCVNSFTATSAVGKRNMSPIQEEAGSEDIESVEISDCELDQTDSCAES
LTEGKKKAKKCKKMKKELTPAGSISSSSAKLFEVPDSW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagatgatccggagcaattttaaaaataatcttcacaaagtgtaccaggcaatagag
gaggctgatttcttggcaatcgatggggagttttcaggaatcagtgatggaccttcagtt
actgcattaaccaatggttttgataccccagaagaaaggtatcacaaacttaaaaagcat
tccatggactttttgctttttcagtttggcctttgcacttttaagtatgacagcacagat
tcaaagtatataatgaagtcatttaacttttatgttttcccaaaacccttcagtagaact
tcaccagatgtcaaatttgtttgtcagagctcaagcatagattttctggcaaaccaagga
tttgattttaataaagtttttcgcaatggaatcccatatttaaatcaagaagaagagaga
cagttgcgggagcaatatgatgaaaaacgttcacagtccaatggtgctggagctttgtcc
tatatatctcctaatgcttcaaagtgtcctgtgattattcctgaggatcagaaaaaattt
attgacaaagtggtagagaaaatagaggatttgatacaaaatgaagaaaacaagaacttg
gatttagaaccatgcacaggatttcaaaggaaactaatttatcagactttaagctggaag
tatcccaaaggcatacatgttgagactttagaaacagagaagaaagaacgttatattgtt
attagcaaagtagatgaggaagaacgtaaaaggagagaacagcagaaacatgctaaagaa
caggaggaactaaatgatgctgtcggattttctagagtcattcatgccattgccaattct
ggcaaacttgtcattggtcataatatgcttttggatgtcatgcatacaattcaccagttc
tactgcccattgcctgaggacttaagtgagtttaaggaggtaacaacatgtgtcttcccc
aggttactggatactaaactgatggcaagcacacagccttttaaggatattattaataac
acatcccttgcagaactagaaaaacgattaaaagaagcaccattcaacccacctaaagtt
gaaagtgcagaagggtttccaagttatgacactgcatctgaacagctccatgaggcaggc
tatgatgcatacattacaggactgtgtttcatctcaatggctaatttcctaggttctttt
ctcagtcctccaaaaattcatgtgtctgccaggtcaaaactcatagaacctttttttaac
aagttatttcttatgagggtcatggatatcccatatctcaatttggaaggaccagacttg
caacccaaacgagatcatgttctacatgtgacatttcccaaagaatggaaaaccagcgac
ctttaccagctttttagtgcctttggtaacattcaggtatcttggattgatgatacatca
gcatttgtctctctcagtcaacctgaacaagtacaaattgccgtcaataccagcaagtac
gcagaaagttatcggatccagacttatgccgaatatgttgaaaagaagcatgtggataaa
cagaacaagagaaaatggacagaaaatagttggaaggaggttgaaagaaagcggttaaaa
acacagtgtacatcgtatagcccacaaagtcggtattactgtgttaacagttttacagct
accagtgcagtaggaaagagaaacatgagccccattcaagaggaagctggctctgaagac
atagagtcagtggaaatatcagactgtgagcttgatcagacagattcctgtgcagaatcc
cttacagaggggaagaaaaaagccaagaaatgtaaaaaaatgaagaaagaactcactcca
gccggaagcatctccagcagttctgccaagctctttgaagttcctgattcatggtag
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