KEGG   Monodelphis domestica (gray short-tailed opossum): 100025556
Entry
100025556         CDS       T01031                                 
Symbol
ALYREF
Name
(RefSeq) Aly/REF export factor
  KO
K12881  THO complex subunit 4
Organism
mdo  Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03013  Nucleocytoplasmic transport
mdo03015  mRNA surveillance pathway
mdo03040  Spliceosome
mdo05014  Amyotrophic lateral sclerosis
mdo05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:mdo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100025556 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100025556 (ALYREF)
   03015 mRNA surveillance pathway
    100025556 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    100025556 (ALYREF)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100025556 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdo03019]
    100025556 (ALYREF)
   03041 Spliceosome [BR:mdo03041]
    100025556 (ALYREF)
Messenger RNA biogenesis [BR:mdo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     100025556 (ALYREF)
    TREX complex
     100025556 (ALYREF)
Spliceosome [BR:mdo03041]
 Complex C
  Other components
   EJC/TREX
    100025556 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100025556 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication F07F6_N
Other DBs
NCBI-GeneID: 100025556
NCBI-ProteinID: XP_007482916
Ensembl: ENSMODG00000003030
LinkDB
Position
2:231926767..231930597
AA seq 258 aa
MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGAQGGRGGGGAQAAARVSRGGGPIRNRP
AMARGGAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSD
ADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ
LVTSQIDTQRRPAQSVNRGGMTRNRGSGGFGGGGGTRRGSRGGNRGRGRGTGRNSKQQLS
AEELDAQLDAYNARMDTS
NT seq 777 nt   +upstreamnt  +downstreamnt
atggccgacaagatggacatgtccctggacgacatcattaaactcaaccggagccagcgg
ggcggacgcggcgggggccgaggccgaggccgggccggggcccagggcggccgcggtggc
gggggcgcgcaggcggccgcccgcgtgagccgaggcggggggcccatccggaacaggcca
gccatggcccgcggaggcgccgggggcggcggcaggaaccgacccgcgccctacagccga
ccaaaacagcttccagataagtggcaacacgacctattcgacagcggttttggaggcggg
gccggcgtagagaccggtgggaaattgctggtctccaatcttgattttggggtctcagat
gcggatattcaggaactatttgctgaattcggaactctgaaaaaggcagctgtacattat
gatcggtctggccggagcttaggaacagcagatgttcactttgagcgaaaagcagatgct
ctgaaggccatgaaacagtataacggtgtccccttggatggccgccctatgaatattcag
cttgttacatcacagattgatacacaacgaagacctgcacagagtgtaaatagaggtgga
atgactagaaaccgtggctctggaggttttggtggtggtggcggcacccggagaggcagt
cgtggaggcaatagaggacgaggcagagggactggaagaaattcaaaacaacagctttct
gcagaagaactagatgcacagttggatgcttataatgccaggatggataccagttaa

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