Monodelphis domestica (gray short-tailed opossum): 100026972
Help
Entry
100026972 CDS
T01031
Symbol
XAB2
Name
(RefSeq) XPA binding protein 2
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100026972 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100026972 (XAB2)
03041 Spliceosome [BR:
mdo03041
]
100026972 (XAB2)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100026972 (XAB2)
Spliceosome [BR:
mdo03041
]
Complex B
Other components
Prp19-related factors
100026972 (XAB2)
Complex C
100026972 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
TPR_15
TPR_16
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_1
RPN7
NRDE-2
Motif
Other DBs
NCBI-GeneID:
100026972
NCBI-ProteinID:
XP_001377412
Ensembl:
ENSMODG00000015022
UniProt:
F7BXF8
LinkDB
All DBs
Position
3:463190444..463201707
Genome browser
AA seq
862 aa
AA seq
DB search
MPEIGDAASTEAKLKTRSERPDLFFEEEDLQYEEEILRNPFSVKCWFRYIEFKQSASQAV
LNLLYERALKELPGSYKLWYHYLKARRAQVKRRCVTDPAYEDVNNCHERALVFMHKMPRL
WLDYCQFLMEQGRITRTRRTFDRALRALPITQHSRIWPLYLRFVRSHPLPETAVRVYRRF
LKLSPESAEEYIEYLRSIDRLDEAAQRLATVVNDERFVSKEGKSNYQLWHELCDLISQNP
DKVQSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDF
TQVFDSYAQFEESMIAAKMETTSELGREEEDDIDLELRLARFEQLISRRPLLLNSVLLRQ
NPHHVHEWHKRVALHQGRPREVINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLD
DARTILEKATKVNFKQVEDLASVWCEYGEMELRHDNYDQALRLLRKATALPARRAEYFDG
SEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYERILDLRIATPQIVINYAMFLEEHS
YFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA
KTLYLLYARLEEEWGLARHAMAVYERATRAVEPSQQHEMFNIYIKRAAEIYGVTHTRSIY
QKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGTFWQTWKDFEI
RHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGMDDMKLL
EHRAEQLAAEAERDQPSRSQGKILFVRSDASRTELAELAQQANPEEIEIGEEEEEEEELQ
PNEVPLEQQSVPATVFGSLKED
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagattggtgatgccgcctcaaccgaggcaaagctgaagactcggtctgagagg
cccgatctctttttcgaagaggaggatttgcagtatgaagaagaaatccttcgcaaccct
ttctctgtcaagtgttggtttcgctatattgagttcaagcaaagtgcatctcaggctgta
ctcaacctgctttatgagcgagccctcaaggagctaccagggagttacaagctatggtac
cattacctaaaagcccgccgagcccaggtgaagcgtcgctgtgtgactgaccctgcctat
gaggatgtcaacaactgccatgagcgggccttggttttcatgcacaagatgccgcgccta
tggttggactactgccagttcttgatggagcaaggccgtattactcggacccggcgcacc
tttgaccgtgcgctgagggctctgcccatcactcagcactcgcggatctggcccctctac
ctacgctttgtgcgctctcaccctctgcctgagactgcagtgcgagtgtaccgccgcttc
ctcaagctgagtcctgagagtgcagaggaatatattgaatacctgcgctccattgaccgg
ctggatgaggcagcccagcgcctggcaactgtggtcaatgatgaaagatttgtctccaag
gaaggaaaatccaattatcagctctggcatgaactgtgtgacctgatctcccaaaaccca
gacaaagtgcagtccttgaatgtgggggccatcatccggggggggctcacccgcttcaca
gaccagctcggcaaactctggtgctccttggcggactactacatccgaagtggacatttt
gagaaggcccgagatgtatacgaggaggcgatccagacagtgatgaccgtacgggacttc
acccaggtgtttgacagctatgcccagtttgaggaaagcatgatcgcagccaagatggaa
acaacttcagagctggggcgggaggaagaagatgacatagacctggagctacgcctggcc
cgctttgagcagctcatcagccgccggcccctcctcctcaacagcgtcctgctgcgccag
aacccacaccatgtgcatgagtggcacaagcgagtggccctgcatcagggccgacccaga
gaggtcatcaatacatacacagaggccgtgcagactgtggatcccttcaaggccacgggc
aaaccccacacactatgggtcgcctttgccaagttctacgaggataatgggcagctggat
gatgcccgcaccatcctggagaaggccaccaaagtgaacttcaaacaggtggaggatttg
gccagtgtttggtgtgagtacggtgagatggagctgagacacgacaactatgaccaggcc
ctgcgactgctgcggaaggcaactgccctgcctgcccgccgggctgagtacttcgatggt
tcagagcctgtgcagaatcgggtctacaagtccttgaaggtgtggtctatgctggctgac
cttgaggagagtctgggcaccttccagtccaccaaggccgtgtacgagcggatcctggac
ctgcgcatcgccacccctcagattgtcatcaattacgccatgttcctggaggagcacagc
tactttgaggagagcttcaaggcctacgagaggggtatctcactgtttaagtggcccaac
gtttcagacatttggagcacatacctgaccaagtttatcgctcgttatggaggccgcaag
ctggagcgggcccgggacctgtttgagcaggcactggatggctgccccccgaaatatgcc
aaaactctgtacctgctctacgcccggctggaggaagagtgggggctggcccgccatgcc
atggctgtgtatgagcgtgccacccgtgccgttgagccctcccagcaacatgaaatgttc
aacatctacatcaaacgtgctgccgagatctatggtgtcactcatacccgcagcatctac
cagaaagccattgaggtgctgtcggacgagcacgcacgagaaatgtgtcttcgttttgct
gatatggaatgtaaactgggagaaattgaccgggcccgggctatctatagcttctgctcc
cagatctgcgatcctcggacaacaggaacgttctggcagacgtggaaggactttgagatc
cgacacgggaatgaagacaccatccgtgagatgcttcggatccggcgaagcgttcaagcc
acgtacaatacccaagtcaacttcatggcctcccagatgctgaaggtgtacagcaatgcc
acgggcactgtgtccgacctcgcccctggacagagtgggatggacgacatgaagttgctg
gagcatcgggcggaacagttggcagcagaggcagagcgggaccagccctcgcgctcacag
ggcaagatcctctttgtcaggagtgacgcctcccgcacggagctggctgaactggcccag
caggccaaccctgaggagatcgagataggggaggaggaggaagaggaggaagagctgcaa
cccaatgaggtgccgctggagcagcagagtgtgccagccaccgtctttgggagcctgaaa
gaagactga
DBGET
integrated database retrieval system
