KEGG   Monodelphis domestica (gray short-tailed opossum): 100027017
Entry
100027017         CDS       T01031                                 
Symbol
SNRNP40
Name
(RefSeq) small nuclear ribonucleoprotein U5 subunit 40
  KO
K12857  Prp8 binding protein
Organism
mdo  Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100027017 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdo03041]
    100027017 (SNRNP40)
Spliceosome [BR:mdo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100027017 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    100027017 (SNRNP40)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WD40_like WDR54 PROPPIN
Other DBs
NCBI-GeneID: 100027017
NCBI-ProteinID: XP_001367385
Ensembl: ENSMODG00000017078
UniProt: F6VKV2
LinkDB
Position
4:430792648..430845840
AA seq 361 aa
MIEQHKRKGPELPLVPLKRPRHELLLGAAGPGAGAGPAAGQQPPPGALLQAGPPRCSSLQ
APIMLLSGHEGEVYCSKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELH
YNTDGSMLFSASTDKTVAVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTV
KLWDIRKKAAVQTFQNTYQVLTVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD
SVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPD
GSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAFHPDEPIILSASSDKRLYMGEI
Q
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgatcgagcaacacaagcggaagggtccggagctgccgctcgtacccctcaagcgaccc
cggcatgagttgctgttgggagcggcgggaccaggggccggggccgggcctgctgcaggc
cagcagccgccgccgggggccctgctacaagcaggtcctccacggtgttcctcccttcag
gctcctatcatgctgctctcaggacatgaaggggaagtatactgtagcaagttccaccct
aatggatccaccctagcatctgcaggatttgaccggctcattttgctgtggaatgtgtat
ggtgattgtgataactatgccaccctgaaaggacacagtggggcagtcatggagttgcat
tataatacagatgggagcatgctattctcagcttccacagataagactgttgctgtgtgg
gatagtgagactggagagagaattaagaggctgaaggggcatacttcctttgtgaattcc
tgttaccctgcccggaggggcccccagctagtttgcactggcagtgatgacggcacagtt
aagctttgggatatccggaagaaagcagctgtccagacatttcagaatacctatcaggta
ttgactgtgactttcaatgacactagtgatcagattatctctggtggcattgacaacgat
atcaaggtctgggacttgcgccagaacaaattgacatacaccatgaggggccatgccgac
tctgtgacaggcttgagtctaagttccgaagggtcttacctgctttccaacgcaatggac
aacacagttcggatctgggatgtccggccttttgcccccaaagagaggtgtgtgaagata
tttcagggaaatgtacataactttgagaagaatctcctaaggtgttcctggtcacctgat
ggaagcaaaattgcagccggatcagctgacaggtttgtgtacgtgtgggatactacaagc
aggaggatcctttacaagctgcctggccatgctggctcagtcaatgaagtggccttccac
ccagatgaacccatcattctctctgcatccagtgacaaaagactttatatgggagagatc
cagtga

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