Monodelphis domestica (gray short-tailed opossum): 100028117
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Entry
100028117 CDS
T01031
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specific factor 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100028117 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdo03021
]
100028117 (CPSF3)
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100028117 (CPSF3)
Transcription machinery [BR:
mdo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100028117 (CPSF3)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100028117 (CPSF3)
U7-dependent histone pre-mRNA processing factors
100028117 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
100028117
NCBI-ProteinID:
XP_001371997
Ensembl:
ENSMODG00000014703
UniProt:
F7D3K9
LinkDB
All DBs
Position
1:complement(530327773..530389458)
Genome browser
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQIQAIPYTGPFSLLFYQLQKLTGDVEEI
DIQQKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIQKGAVPK
GPKKLELNIYSKRLEIMLQDIFGEECVSVKEGSILSVTVDGKTANISLDTRTVECEEGSE
DDESLREMVELAAQRLFEALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgattccggcagaggagagcgaccagctgctgatcagacctcttggagctgga
caagaagtaggaagatcatgtattattctagagttcaaaggaagaaaaataatgttggat
tgtggtattcatcctggcttagaaggaatggatgctctcccttatattgatttgatagat
cctgctgaaattgatctcctcttaattagtcatttccatttagatcattgtggtgcctta
ccttggtttcttcagaagacaagtttcaaaggaagaacatttatgactcatgcaacaaaa
gctatttacagatggcttctttctgattatgtcaaagttagtaatatatcagcagatgac
atgctgtacactgagacagatttagaagagagcatggacaaaattgaaactatcaacttt
catgaagtaaaggaagttgcaggaatcaaattttggtgttaccatgcaggccatgttctg
ggagcagccatgtttatgattgagattgctggtgtaaagcttttatacacaggtgatttc
tcaagacaagaagataggcacttgatggcagctgaaattcctaatattaaacctgatatt
cttatcattgaatctacatatgggactcacattcatgaaaaacgtgaagagcgagaggca
agattctgtaacactgttcatgatattgtaaatagaggtggcagaggtcttattcctgtc
tttgctctgggacgagctcaagaacttcttctaattttagatgaatattggcagaatcac
ccagaactccatgacattccaatatactatgcatcatctttggctaagaagtgtatggca
gtataccagacctatgtaaatgccatgaatgacaaaatacgcaaacaaatcaatatcaac
aatccctttgtcttcaaacacattagtaatcttaagagtatggatcattttgatgacatt
ggcccaagtgttgtgatggcttcaccaggaatgatgcagagtggcttatccagggaatta
tttgaaagctggtgtactgataaaagaaatggtgtgattatagctggatactgtgtcgag
ggaacacttgccaagcatatcatgtctgaacctgaagagatcactaccatgtctggacag
aagctgcccctgaagatgtctgtagattacatttctttctcagctcatacagattaccag
caaaccagtgaatttattcgagctttaaagcctccacatgtgatattagtgcatggagaa
cagaatgaaatggcaagattgaaagcagcattgataagagaatacgaagacaacgatgag
gttcacatagaagttcacaaccctcggaataccgaagcagtgacattaaacttccgagga
gaaaaactagccaaggttatgggcttcctagcagataagaaacctgaacaaggacagcgt
gtctcaggaatcctggttaaaagaaactttaattatcatattctttctccttgtgacctt
tccaattatacagatttagcaatgagcactgtaaagcagattcaagccattccctacact
ggtccttttagcttgctgttttatcagctacagaaactgacaggtgatgtagaagaaatt
gacattcagcaaaaaccggctttgaaagtgttcaaaaatattactgtaatacaagaacca
ggcatggtagtattagagtggttagcaaatccttctaatgatatgtatgcagatacagta
acaacagtgatcctcgaagttcagtcaaaccccaaaatacagaaaggtgcagtacctaag
ggaccaaaaaaattggaactgaatatttacagcaagagattggagattatgcttcaggac
atatttggagaagaatgtgtaagtgttaaagaaggatccattctaagtgtcaccgtggat
ggaaagactgccaatatatccttggacacacgaacagttgaatgtgaagaaggaagtgaa
gatgatgaatcccttcgagaaatggtagaacttgctgcacaaagactctttgaggctctc
acaccagttcattaa
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