Monodelphis domestica (gray short-tailed opossum): 100028643
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Entry
100028643 CDS
T01031
Symbol
PDCD11
Name
(RefSeq) programmed cell death 11
KO
K14792
rRNA biogenesis protein RRP5
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mdo03009
]
100028643 (PDCD11)
Ribosome biogenesis [BR:
mdo03009
]
Eukaryotic type
90S particles
Other 90S particles
100028643 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
OB_RRP5
Suf
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
DUF2110
TPR_12
ARM_TT21_5th
TPR_2
TPR_6
TPR_1
TPR_8
BTAD
TPR_7
Motif
Other DBs
NCBI-GeneID:
100028643
NCBI-ProteinID:
XP_016284094
Ensembl:
ENSMODG00000011077
LinkDB
All DBs
Position
1:complement(108615164..108654752)
Genome browser
AA seq
1880 aa
AA seq
DB search
MASQEDSFPRGGSKKKAHPVKAPQQPIEHDNLFDIPTEEGSRKRKRNPEQAAKNKRSKTE
KKEPSKSEAEQSGILSIEVLSEGMRLLGCVKEVNNLELVISLPNDLWGYVQATNICDAYT
KKLNEQVDREEPLEDLAPLSKLFQPGMLVRCAVSSLKSTSKKNKSIKLSLNPKDVNGVLS
PAALKPGMLLTGTVDSVEDHGYLVDIGVGGTKAFLPWQKEQEYVKQKNKGTKLQVGQYLN
CLIEEVKGNGGSVRLSTIQSEVSAAIATEEQNWTLDNLLPGLVVKAQVQKVTPYGLSLSF
LSSFTGLVDFMHLDSKKTGHYFQTQMVRACILSVHPRTKSVRLTLHSSFLQAGRPITRLC
HHLIGAVLNDVPVQSFYTKAGATFRLKDGSLAYARIRHLSQTEKSFKPEKFKPGNLHRCR
VIDFSPMDDLALLSLKTSIIEAPFLRYHDIQPGQIVKGKVFTLRSYGMIVKVTEQIKGLV
PTLHLADVQIRNPQKKYRVQDEVKCRVLMCDPENKKLLMTLKKTLVESSLPALTNYKEAK
PDLQTHGFISSIKDCGCIVKFYNDVRGLVPQRELGAQPISAPEEVFYVGQVVKVTVLKSE
PEQERMLLSFRLSNDKEMESTAQSQKKAMVKTGQLVDVKVKKKTEKGLEVSILPDDISAL
LPTTHLSDNVTNSQLLCYWLQAGDILHKVLCLSHSDGHIVLCRKPALISAVESGQDPKVF
SEFQPGMLLTGFVKSIKAYGIFVQFPSGLSGLAPKSALSDKFVTTISDHFVEGQTVVAKV
TNVDEEKQRMLLSLRLSDVSQEDTTASSLTLLSQCLEELQGVRSLMSSRDSVLTQTLAEM
TPGLLVDLVVQDMSSDGSLVFSNGSVPGLVLRASKYHQGGKAVDPGQRTKAVILHVDTQK
SEVHVSLRQELVNRKVKQLKKDTEHRAVIEHLEKTFAIASLVETGQLIAFPVASHLNDTF
RFDSEKLQVGQGVSVIIKSTKPCDIGLFLAVESSVKKRTPALPSVAPESAGQDPGVVSEL
LEKPTLPIGEMVTGTVKSIKATHVIVTLENGLTGYIHASQILDDVSHGTHPTTTLKVGNP
VTARVIGQRTWLTHKSLPISHPSSTQTVSELSIRPSELEKNISSDPSTQSSSPTEKLKQY
FPGQTVVCFMRKFNVIKKWLEVEITSDIRGRIPQLLTSLSFKVCVSVTCGQSSLGAGIQI
VCPIDRPRVSLSHRKNGTKSSLELSLSLSLPLSLSFRTNPKMKSKIEDPEVTSMKDIKEG
QLLRGYVEAIKKQGIFFRISPTLVGRVKYQHVTTYLPFDRALYQTYLPEGKLLSAKVLRV
NRKQNLLYLSFLPKDTGKPDVFPESLGLPPRDQERELLSNQPKKKRKLEQEEEDHGASET
KKKQQLKEKKEKKQLMKEKKEKQKQLMKEEKEKQKQLMKEKKKKQKQLVKEKEKQCQTKE
EMHQAKQKQEDQSQPHREPGAKQKQELQTPSVRPGEKAENKGKRKVPEVEREQEIVSKKK
KQSHPLEEDDSGVEVNYKEEKEKRFKQSKKKQTKPTEVPRLQLSSGFAWDVSLDTLAPAM
PPREDSSDSEDEEASQATLKKSKKGKELEKQEAEKELSRIEAALMDPNWKPETADDFDRL
VLSSPNSSILWLQYMAFHLHATEIEKARAVAERALKSISFREEQEKLNVWVALMNLENMY
GSKETLTKVFERAVQYCEPLKVYFQLADIYTKSEKYQAAEELYSRMLKRFRQEKTVWIRY
GAFLLQRGQADANHRLLQRSFNCLPQKEHVDVISKFAQLEFQLGDAERAKAMFETTLSSY
PKRTDVWSVYIDMIIKYGSQKEARDIFERVVHLSLAPKRMKFFFKRYLDYEKQHGTAETV
QAVKEKALAYVEATGTLAES
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atggcatcccaggaagacagtttccctcgagggggttcaaaaaagaaggcacatccagta
aaagctcctcagcagccaattgaacatgataatttatttgatattcccactgaagaagga
tcccgcaaaagaaaaaggaacccagagcaagctgctaaaaataaaaggtcaaaaacagaa
aaaaaagaacccagcaaatctgaagcagagcaaagtgggattctcagtattgaggttctg
agtgaaggaatgagactcctgggctgtgtgaaagaggtaaataatttggagcttgtgatc
agcctgcctaatgacctctggggatatgtgcaagcaaccaatatctgtgatgcctataca
aagaaactgaacgagcaggtggatcgagaggagcctctggaggacttggctcccttgtcc
aagttgttccagccggggatgctggtacgctgtgctgtcagcagcctaaagtccacctca
aagaaaaataagagcatcaagctgtctctaaaccccaaggatgttaatggagttctcagt
cctgctgccctgaagccaggcatgctactcacaggcacagtagacagtgtggaggaccat
ggctacctggtggatattggtgtaggagggaccaaagccttcctgccttggcaaaaagag
caagagtatgtcaaacagaagaacaaaggtactaaacttcaggttggccagtatctgaac
tgccttattgaagaagtaaaaggcaatggggggagtgtccgtctgtccactattcagtca
gaagtttctgctgccattgctacggaagagcaaaactggacgctagataatctactacca
gggctggtggttaaagctcaggtgcagaaggtgaccccttatggtctctccctaagcttc
ctctcttccttcactggactagttgattttatgcatttggattctaaaaagactggacat
tacttccaaacccaaatggtgagggcctgtatcctctcagttcatccacgtaccaaatct
gtccgactaaccttgcattcctccttcctgcaagctggtcgccccatcactcgcctctgc
caccatcttattggagctgtgttgaatgatgtgcctgtccagagcttctatacaaaagct
ggtgccaccttcaggctgaaggatgggtctctggcttatgcccggatcaggcacctctcc
cagactgagaagtcctttaaaccagagaagttcaagcctggaaatctgcacagatgtcgg
gttattgattttagcccaatggatgatctggcattgttatctctgaaaacgagcatcatc
gaagctccattcctgagatatcatgacatccagccagggcagatagttaagggcaaagtg
ttcacactaagatcctatgggatgattgtgaaggtgaccgagcaaatcaaaggcctggta
cctaccttgcatttggctgatgtccagatacggaatcctcaaaaaaagtatcgggtccaa
gatgaggtcaaatgccgggttctgatgtgtgaccctgagaacaagaaactgctaatgact
ttgaaaaagaccctggtggaatctagcctgccagctctcacaaactacaaggaagccaag
cctgatttacagactcatggtttcatcagcagcatcaaggactgtggttgcattgtcaag
ttctataatgatgtgaggggattggtaccccagagggaacttggtgcccaacccatctca
gccccggaggaagtcttctatgtaggacaggtggtgaaggtcacagtgctgaaaagtgag
cctgagcaggagaggatgctcttgtccttcaggctgtccaatgacaaagaaatggaaagc
acagcccagagccagaagaaagccatggtcaagaccggacagttagtagatgtgaaggtg
aaaaagaaaactgagaagggattggaggtgtccatcctacctgacgacatcagtgctttg
cttcccacaacccatctgtcagacaatgtcaccaatagtcagttgctctgctactggctc
caggcaggtgacatcctccacaaggtcttgtgtctgagccacagtgatggtcacattgtc
ctatgcaggaaaccagctctgatctctgctgtggaaagtggccaggatcccaaggtcttt
tctgaatttcagcctgggatgctgcttacaggttttgtgaaaagtatcaaggcttatggc
atctttgtccagttcccatcaggcctcagtggattggctcccaaatcagccttgagtgac
aagtttgtgactacaatcagtgaccacttcgtagaagggcagacagtggttgcaaaggtg
accaatgtggatgaggagaaacaacggatgctgctctccctccgcctgtcagatgtcagc
caggaagatacaactgcaagttctcttaccctcctaagccagtgtttggaagagctgcaa
ggtgttcgaagcctcatgagcagtcgagattctgtgttgactcaaacattggctgagatg
accccagggctacttgtggatttggtggttcaagacatgtcaagtgatggctctctggta
ttcagtaatggctcggtgcctggcctggtattgagggccagcaaatatcaccagggaggg
aaggcagtggatcctggacaaagaacaaaagctgtcatccttcatgttgatacacagaag
tcagaggttcacgtttctctgcgccaggagctggtgaatagaaaagtcaagcagctgaag
aaagacactgagcaccgagcagttatagaacatttggaaaagacatttgccatagcttcc
ttagtggagactggtcagcttatagctttcccagtggcctctcacctcaatgataccttc
cgttttgactcagagaagctacaggttggtcagggggtctctgtgatcatcaagagtacg
aagccctgtgacattggtctcttcttagctgttgagagctctgtcaagaagaggaccccg
gctctgccctcagtagctcctgagtctgcagggcaagatccaggagtggtgagcgaactg
ctggagaaacccaccttgcccattggggagatggtcactggaactgtgaagtctatcaag
gccacccatgtcattgtgaccctcgagaatggtcttactggctatatccatgcctcccag
atcctggatgatgtatctcatggcacccaccccactaccacacttaaagttggaaatcca
gtcactgctcgagtaattggccagagaacttggcttactcacaaatccctcccaattagc
catccatccagtacgcagactgtctctgagctgagtattcgaccaagtgagcttgagaaa
aacatcagcagtgaccccagcactcagtcctctagccccacagagaagctcaagcagtat
tttcctggccaaacggtggtctgttttatgagaaagttcaatgtaatcaagaaatggctt
gaggtggagattacttctgacatccggggaagaattcctcagctgctgacctctctcagt
ttcaaggtctgtgtatctgtcacctgtgggcaatcctcacttggagctggaattcaaatt
gtatgccccattgacaggccaagagtttcactttcacataggaagaatggcacaaaaagc
agtttggagttaagcctctctctctccctgcctctgtctctctcctttagaacaaatcct
aagatgaaaagcaaaatagaagaccctgaagtgacctcgatgaaagacattaaagaaggg
cagctcctccggggctacgtggaggccatcaaaaagcaggggatattttttcgcattagc
cccacacttgtgggccgggtcaagtaccagcatgttaccacatacctcccgtttgaccga
gctttgtaccaaacctacctcccagaaggaaagctactctcagccaaggtcttgagggtg
aaccggaaacagaacctgttgtatctgtccttcctccccaaggacactgggaagccagat
gtgtttcctgaatctttgggcctgccaccacgggaccaggaaagggagttgctcagcaat
cagccaaagaagaagcggaaattggaacaagaggaggaagatcatggtgcctctgagaca
aaaaagaagcagcagctgaaagagaagaaggaaaagaagcagctgatgaaagagaagaaa
gagaaacagaaacaactaatgaaagaggaaaaggaaaaacagaagcagctgatgaaagag
aagaagaagaaacagaagcagctggtgaaagagaaggagaagcagtgtcagacaaaagag
gagatgcaccaagcaaaacagaaacaggaggaccagagtcagccacacagagaacctggg
gcaaaacagaaacaggagttgcaaacgccctctgtcaggccaggagagaaggcagaaaat
aaagggaagcggaaggtaccagaggtggaaagagaacaggagatagtgagcaagaagaaa
aagcaaagccatccactggaagaagatgatagcggagttgaagttaattataaggaggag
aaagagaagagatttaagcagtccaagaagaagcagaccaagcccacagaagtccccagg
ctgcagctatcttcgggctttgcttgggacgtgagtctggatacactggccccagccatg
ccaccccgagaggacagttcggacagcgaagatgaggaagcaagccaagccacgctaaag
aaaagcaagaaaggcaaggagttggagaagcaagaggcagagaaggagctgtcacgaatt
gaggcagccctcatggacccaaattggaagcctgagactgcggacgattttgacagactg
gtcctgagctcccccaacagctccatcctctggctgcagtatatggctttccacctgcat
gccacagagattgagaaggcccgagctgtggctgagagggctcttaagtccatctccttc
agagaagagcaggagaagctgaatgtgtgggtggccctgatgaatctggagaacatgtat
ggctcaaaggagaccctgactaaggtctttgagcgggctgtgcaatactgtgagcctttg
aaggtctacttccaactggctgacatctacaccaaatcagagaagtaccaggcagctgaa
gaactctacagtcggatgctgaaacgtttccgacaagagaagaccgtgtggatcagatat
ggtgccttcctccttcagaggggccaggctgatgccaatcaccgcctgctgcagcgatcc
ttcaattgtctgccgcagaaagaacatgtggatgtcatctccaaatttgcccagctggag
ttccagctgggggatgcagaacgagccaaggccatgtttgagaccacacttagcagctac
ccaaagcgcacagacgtctggtctgtctacattgacatgatcattaagtacgggagccag
aaggaagcccgggacatctttgagcgagtggtacatctgagcctggcccccaagcggatg
aaattcttcttcaaacgctacctggactatgagaaacagcatggcacagctgaaacggtg
caagctgtcaaggagaaggccttggcctatgtggaggccacgggcactcttgctgaaagc
tag
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integrated database retrieval system
