Monodelphis domestica (gray short-tailed opossum): 100030416
Help
Entry
100030416 CDS
T01031
Symbol
COL6A5
Name
(RefSeq) collagen alpha-5(VI) chain
KO
K06238
collagen type VI alpha
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo04151
PI3K-Akt signaling pathway
mdo04510
Focal adhesion
mdo04512
ECM-receptor interaction
mdo04820
Cytoskeleton in muscle cells
mdo04974
Protein digestion and absorption
mdo05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100030416 (COL6A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100030416 (COL6A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100030416 (COL6A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100030416 (COL6A5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100030416 (COL6A5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100030416 (COL6A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mdo04147
]
100030416 (COL6A5)
00536 Glycosaminoglycan binding proteins [BR:
mdo00536
]
100030416 (COL6A5)
Exosome [BR:
mdo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100030416 (COL6A5)
Glycosaminoglycan binding proteins [BR:
mdo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100030416 (COL6A5)
Hyaluronan
Extracellular matrix or blood plasma proteins
100030416 (COL6A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
VWA_CoxE
COX7B
Med25_VWA
TssR_VWA
Motif
Other DBs
NCBI-GeneID:
100030416
NCBI-ProteinID:
XP_007505178
LinkDB
All DBs
Position
8:complement(274854907..274985201)
Genome browser
AA seq
2645 aa
AA seq
DB search
MLLISFTLIILAGASADQSPGPEFADVVFLVDSSDHLGSKSFPFVRTFINKMINTLPIEP
NKFRISLAQYSDDLYEEFLLNTYNTKNAMANHIKKNFDYIGGPLLIGNALKKVHTTFFSG
SQNGRDKKLFPQILVVLASAKSEDDVEGPAEALRRDGVKIISLGIQDASEEDLKAMATSQ
YHYNLRTARNVGIFSENMTRIIKETIKHKEIIQDDDEVVCERDSLADIVFLLDESLKVRR
NLENLQKFLENITASMDIKAGCTRIGILSFSDETEVVASLERDMTHDEIIQAIRSLSLRD
GKAYIGAAMKKARELFSHSRKAQGVRQIAVLVTHRSSEDDMHEAAEDLLLQGVSIFGIGI
KGYNITQFKQMVSYPPDHYISEQNSYAELEKYTVTLLKKLQYEVQYRTSVQYGQTERYRT
GCIETEKADIYFLIDGSGSVRPYFHEIKNFMIEVIQMFNVAPEKVRFGAVQYSSTHQQEF
GISTYSNVVDLSKAILNIRQLGHTTNTGAALRFMLEEIKSSKKKQHDSVPCHLLVVTDGM
SNDEVSEPAKRLREEDVIIHAIGVKGANIIELKDIAGSEDRVKFVYNFESLKGIKNEIVQ
TICRERDCKDKRADVMFLVDSSKSIGAPAFNKIKIFMKNMVNKSHVGLDQVHIGVGQYSN
VFKEEFGLTEYMTQRDIFDAIDRMNFIGDKTYTGKALEFVSSYFEPLKGGRKGVKKFLIL
ITDGFSQDSITEPALHLRNNEVVILLVAIFRSKSPQLEDITGDPNLVYYVEKFDDQKLLE
DKLVFDLCTLHECKQFQVLDIVFVLDDSSSISEHQYESLINFTKHLVEKADVGRDRVQFG
ALKYSDTPEILFYLNDYQNKKSIIDKLKFQRKGGNTYTAKALNRSHELFTEQHGSRIKRG
VKQMLIVITDGKSHDYLELETVGKALRAKNIIIYGVGVAEASDKELLDITGSKDNYFMVD
NFEKLKEIYLPIEKKACENALDVCDMKKADVFFLCDGSDLVSEMEFGKMVYFLADIIDNL
EVSPQDVHIGMSQLGSFGQEILQMNATLSREERKAKILATIRRKGNPQLGSALRHLKDTF
VSGSRIMAGVPQILFVILSGRPRGSTTRVTKAVEKLRELGVCIIALGIGDVRNDEYLHVT
HNPEKIITVSDFDKLKTADVRKRVVREICRDCQQENCFVDTVVGFDISTHRRGQTLFEGQ
PYLESYLPNLLESINSLRGVSCGRKTQVSVAFKVNTDPSFVSRFQIYEKTMMETLRQVTV
SGPSYLHVAYLESLWSVFHHSETHGKVILIFSDGLRHESEDLWRLEEKSDELRKKGLLGL
FVVALNTTSQYEDFSTFEFGKGFEYRTHLSLGMRDLSSTLTAYLDNIAERHCCCALCKCS
GARGLPGSPGSRGPKGYWGQKGSRGHRGEEGDPGTRGGSGPEGERGAQGCQGERGLKGVR
GVSGFKGEDGDFGINGINGEQGFYGTPGKKGEKGDRGSQGSPGTRGAPGVHGGKGFQGDP
GEPGRDNFFRGPKGAKGEQGKQGQRGQKGEDGQPNSRGNRGPTGRRGIYGPKGPVGAVGP
KGEAGPEGLRGTEGRSGQPGQMGEKGSPGNKGPQGASGLAGSKGSPGKPGTMGKKGEPGA
PGNEGPVGPTGSRGMQGDYGIPGFGHQGRKGAKGSRGHPGDSGDKGDVGNPGTPGKPGPK
GFRGLTFGVGPKGDIGSPGSPGPAGSPGPKGMKGLPIYSQCDLINFLRDHSPCWEDKCPV
YPTELVFALDVSRQRFEVVKNMTISIVNDLKIRENNCPVGARVAVLSYSSENRYLVRWSD
YSSKRQLLQKLSRMTFEQPSYSRDLGSSMLFVGRNAFKRTLPGPNVRRLTVFFSDSQSPD
ISSIITATMEFSGLNIIPAVFAFNDMFALEEAFQFDDTGTYQVIPVRPSQFSHPIERLRR
CTLCYDKCFPNVCAEEQIDQVHSYVDAIFLLDSSRHVRGDEFEQMKAFLSSVLDNFDISA
DPEQSDVGDRLALLSYSPRDFSIRRTSTPVKKEFDFTTYSSKALMRRHIHNSLKQLHGEA
YVGHALQWTTNMVFSNTFHSRKNKVIFVITAGENNENKDVLRKISLRAKCQGYVIFVISL
GSTREEIEDVASLPLEHHLIQLGRVHKPNLDYAVRFIKPFVYSVRRGFNKYPPAGLETQC
RLISSEPSFFLNRNKMSSEYDITSGENALLNEEAMNLDHSPVLLGDNESKEMIYLHNQMV
TSKELKVTYPKMMGTEEITTLISESIVDPTQSFELEDVGKKPSSDYATLERPFYRVDEPM
DMGKVEMDLKPDPASLTKGGDNLGGGEESGSTLESGSPSLRDVFMDVAFLLDSSWNMGSS
EFQEIKSFIASVLDYFYITPDPLTSPVGDRVALLSYSPPGYMPNGEECPVLLEFDLMTYN
NAHQMKSYIWESLQQLNGNSFTGHALKWTIDNIFSGTPNLRKNRVIFVISAGETNYLDRK
TLKEESQRARCLGYAIFVLSFGPRHNDKELEELASQPLDHHLVQLGRIHKPDFDYIVRFI
KPFLHSVRRAINKYPSADYALKCPNVTSSSSKKFQEELLLPKGSEVEAENSDFSDEYDFP
EHHVLILEGNHSDNSGNVLDFIQELTRLFATGEVLINDQEEPCSSENTTITEDDQKTNKD
DGDIR
NT seq
7938 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaatctcgttcaccttaatcatcttggctggagcatctgccgatcagagcccc
ggccctgagtttgctgatgttgtgttcctggtagatagctctgatcacctgggaagcaag
tcctttccctttgtgagaacctttataaacaagatgatcaacactctacccatagaacca
aacaaattccgtatttcccttgcccaatacagtgatgatctatatgaggagttcctgctg
aacacctacaataccaagaatgccatggcgaaccacatcaaaaagaactttgactacatt
ggtgggcccctgctaattggcaatgctttaaagaaagttcacacaacctttttctcaggg
tcacaaaatggaagagacaagaaattatttccccagattttagttgtcctggcttcagcc
aaatctgaggatgatgtggaaggacctgcagaagccttgaggagagatggagtgaaaatc
atctccctggggatacaagatgcttctgaagaagacctaaaagccatggccacttctcaa
tatcattataacctgaggacagccagaaatgtgggcatattttctgaaaacatgaccagg
atcattaaagaaaccataaagcacaaggaaataatacaagatgatgatgaagttgtatgt
gaaagagattccttggccgacattgtcttcctactggatgagtccttgaaggtcagaagg
aatttagaaaaccttcagaagttcctggagaacatcacagcctccatggatataaaagca
ggttgtaccaggataggtatactgagtttcagtgatgagacagaggtggtggcttctctg
gaaagagacatgacccatgatgagattatacaagccattaggagcctgtctctaagggat
ggcaaagcctacattggagcagccatgaagaaggccagagaactctttagtcacagcagg
aaggcccagggtgtgcgacagatagccgtcctggtcactcatagatcatcagaagatgac
atgcatgaagcagctgaggaccttctgctgcagggtgtgtccatctttggcatagggatt
aaaggctacaacatcacccaattcaaacagatggtatcttaccctccagatcattatatt
tctgaacagaacagctatgccgaactggaaaagtacactgtaacccttcttaaaaaactc
cagtatgaagtacagtaccggacatctgtccagtatggacaaacagagcgttacaggaca
ggttgcattgaaacagaaaaggctgatatctattttctcattgatggctcaggaagtgtt
cgaccttacttccatgaaatcaagaatttcatgatcgaggtgatacaaatgtttaatgtt
gctccagagaaggtccgctttggagcagtgcaatactcaagcactcatcaacaagagttt
ggtatcagcacatactctaacgtggtggacttaagcaaggccattctcaacatccgacag
ttggggcacacaacgaacacaggagcagctctgcgtttcatgctagaagagataaagagc
tcaaagaaaaagcaacatgactctgtcccctgtcatctccttgttgtgacagatggaatg
tccaatgatgaagtttcagaaccagccaaaagactaagggaggaagatgtaatcattcat
gcaattggtgtcaaaggagctaatataatagagctgaaagacatagcagggtcagaggac
agagttaaatttgtgtataattttgaatctttaaaaggcataaagaatgaaattgttcag
accatttgccgtgaaagagattgtaaagacaaaagagctgatgtcatgtttctggttgat
agttccaagagcataggagctccagccttcaataaaataaaaatatttatgaaaaacatg
gtgaacaagtcccatgttggccttgatcaagtacatattggagttggtcagtacagcaat
gttttcaaggaagaatttgggctcactgaatatatgactcaaagagacatttttgatgca
attgacagaatgaattttattggagataagacctatacagggaaagcactggagtttgtg
tctagttactttgaacctttgaagggaggacgtaaaggtgtcaagaaatttctcattctt
atcaccgatgggttttcacaggactctattacagaaccagctttacatcttcggaataat
gaagttgtcatcctcttggtcgccatcttccggtcaaaatcacctcagctagaggatatc
actggagatcccaacttggtttattatgttgagaaatttgatgaccaaaagctacttgaa
gataagctggtttttgatctatgcactctccatgaatgcaaacagtttcaagtgctagac
atcgtattcgtgctggacgactcctcgagcataagtgaacatcagtatgagagcttgata
aacttcacaaagcacttagtggaaaaggcggatgtcggaagagatcgtgttcaatttgga
gccctcaaatattcagatacacccgaaatcctcttctaccttaatgattaccagaacaag
aaaagcatcattgataaactgaagttccagagaaaaggaggaaatacgtacacggccaag
gctctgaacaggtcacatgaactatttactgagcaacatggcagtcgaatcaagagaggt
gtaaagcaaatgcttattgtgattactgatgggaaatctcatgattaccttgaactcgag
accgtaggcaaggcactaagagcgaagaacatcatcatctatggagtgggtgtagctgaa
gcttcggacaaagaacttttggacataacaggctcaaaagacaattatttcatggtagat
aattttgagaaactgaaagaaatttacctccctattgagaaaaaggcttgtgaaaatgca
cttgatgtctgtgacatgaaaaaggcagatgtgtttttcctttgtgatggctctgatttg
gtaagtgaaatggagttcggcaaaatggtttattttttggcagacatcattgataatctt
gaggtctcacctcaagacgtgcacattgggatgtcccaattaggttcttttggccaggaa
attctccaaatgaatgctaccttgagcagagaagagcggaaagctaaaattttggctacc
ataaggcgcaagggaaatcctcaactaggaagcgcccttcgccacctgaaggacaccttt
gtttctggaagcaggatcatggctggggtccctcagatcctgtttgtcatcctctctggg
aggcctcgggggagcacaaccagggtgactaaggctgtggaaaaactgagagagcttggc
gtgtgtatcatagccttgggcattggggatgtccggaatgatgagtatctccatgttacc
cacaaccctgagaagatcatcactgtgtccgactttgataaattaaagacagcagatgta
agaaaaagggtcgtccgggaaatctgtcgtgactgtcagcaagagaattgctttgtggat
actgttgtgggctttgacatctcaacccatcgtcgcgggcagaccttgtttgagggtcaa
ccataccttgaatcttaccttccaaacctcttagagtctatcaactccctaagaggtgtg
agctgtgggagaaagacccaagtcagtgtggcatttaaagtgaatactgatcccagtttt
gtatccaggttccaaatctatgaaaaaacaatgatggaaaccctgaggcaggtcacagtc
agtggaccttcttaccttcacgtggcttacctagagtcactgtggagtgtatttcatcat
tctgaaactcatggaaaggtgattctcatattctctgatggtctcaggcatgagtctgaa
gatctgtggaggcttgaggagaaatcagatgaactcagaaaaaaagggttgttgggttta
tttgttgtggccctgaacaccacctctcaatacgaagacttttcaacctttgaatttgga
aaaggattcgaatataggacacatttaagccttgggatgagagacctgagcagcacattg
actgcgtacttggacaatattgcagaaagacattgttgctgtgccctttgcaagtgttca
ggggctcgggggttaccaggatcaccaggatcaaggggcccaaagggatattggggtcag
aagggcagccgtggccacagaggagaagagggggatcctggaacaagaggaggcagtggg
ccagaaggagaaagaggtgctcagggatgtcagggtgaacggggtcttaagggagtcaga
ggagtgagtggatttaagggagaagatggagattttggaattaatgggataaacggagaa
cagggattctatggaactcctggtaagaaaggagagaaaggtgaccgaggatcccaggga
agcccgggtaccagaggtgcccccggtgtccatggtgggaaaggatttcaaggagatcct
ggtgaacctggacgtgacaatttctttagagggcctaaaggagccaaaggagagcaagga
aaacaaggccaaagaggacagaaaggcgaagatggccaacctaactcaagaggaaataga
ggaccaacaggcagaagaggaatctatggaccaaagggcccagttggagctgttggccca
aaaggtgaagctggacctgaaggattaagaggaactgagggacgaagtggacaacctggt
cagatgggagaaaaaggaagtcctggaaataaagggcctcagggggcttctggacttgca
gggtctaaagggagtcctgggaaacctggaaccatgggaaagaagggagaacctggagct
ccaggaaatgaaggaccagtgggaccaactggatcgcgtggaatgcagggagactatggc
attccaggctttggccaccagggaaggaagggagcaaagggctcaagaggacacccagga
gacagtggagacaagggtgatgttggaaacccaggaactccagggaaacctggacctaaa
ggattcagaggactcacatttggtgtaggtcccaagggtgatattggttctcctggctct
cctggacctgcagggtcaccgggtcctaaaggcatgaagggactgcctatatattctcaa
tgtgatcttattaatttcctgagggaccatagtccctgttgggaagacaaatgccctgtc
tacccaacagaattggtgtttgctctagacgtgtcaagacagagatttgaggttgtgaaa
aacatgaccatttccattgtgaatgaccttaaaatcagggaaaacaactgtccagtggga
gcaagggttgctgtcctttcctacagttctgaaaataggtatcttgtccgctggtcagac
tattccagcaagaggcaactcctccagaagctctctagaatgacatttgaacaaccttca
tactccagagatcttggcagttccatgttatttgtgggcaggaatgctttcaagagaacc
ttaccaggccctaatgtcaggaggctcactgtgttttttagtgacagtcagtctccagat
atatcatcaatcatcacagccaccatggagttcagcgggctcaatatcattccagctgta
tttgcttttaatgacatgtttgctcttgaggaggctttccagtttgatgacactggcaca
tatcaggtcattccagttcgaccctctcagttttctcatccaatagaaagacttcgccga
tgcacactttgctatgataaatgctttccaaatgtttgtgcagaagagcaaatagaccaa
gtacattcatacgtggatgccattttccttctggatagctcccggcatgtgagaggagat
gagtttgagcaaatgaaagctttcctgagctcagtccttgacaactttgacatttctgca
gaccctgagcaatctgatgtgggtgatcggttggctttgctaagttactctccaagggat
ttctccataagaaggacaagcacccctgtgaagaaagagtttgactttaccacctattct
agcaaagctctaatgaggaggcatatccataattcccttaagcaacttcatggagaagcc
tatgttggccatgccttgcaatggacaacaaatatggtcttctccaatacattccactca
aggaaaaacaaagttatctttgttataactgctggagaaaataatgaaaataaggatgtc
ttaaggaaaatatccctgagggccaaatgccaagggtacgtcatatttgtgatttctctg
ggatctacacgagaagaaatagaagatgtagccagtctccctctggaacatcacttgatt
caacttggcagagttcacaaacccaatttggactatgctgtgcggttcattaagcctttt
gtatattcagtcagacgaggattcaataaatacccccctgcaggattggagacacagtgt
agactcatttcttcagaaccatcattttttctaaataggaataaaatgtcttctgaatat
gatatcacctctggtgaaaacgctttgttaaatgaagaggcaatgaatctagatcattcc
ccagttttactaggagataatgaaagtaaggagatgatctatcttcacaaccaaatggtt
acatcaaaggaactaaaagtgacatatcccaaaatgatggggacagaagaaataacaact
cttatttcagaaagtatagtagacccaacacagagttttgagttggaagatgtcggtaag
aagcccagctctgactatgcgactttagaaaggccattttacagagtggatgaaccaatg
gacatggggaaggttgaaatggatttgaaacctgaccctgcctctcttaccaaaggaggt
gataaccttggaggaggagaagaatctgggtccactttggaatctggcagtccatctctg
agagacgtttttatggatgtagctttcctcctagactcttcgtggaatatgggaagttct
gaatttcaagaaataaaaagttttatagcttcagtgcttgactacttttacattactcca
gacccactgacctctcctgtaggagacagagtagccctcttgagctattcccctccaggc
tatatgcccaacggtgaagaatgtccagtcctcttggagttcgacttaatgacttataac
aatgcacatcaaatgaaaagctacatctgggaatctcttcaacagttgaatggtaactct
tttactggccatgccctgaaatggacgattgataatatcttctcggggacacccaacctg
aggaaaaacagggttatctttgtgatatctgctggggagaccaattatttggaccgaaaa
accctaaaggaagaatctcagagagccagatgcctaggctatgccatcttcgtgttatcc
tttggccccaggcacaatgacaaagagctagaagaattagccagccaacccttggatcat
cacttggtccagctgggaagaattcataaacctgactttgactacattgtgaggttcatt
aaaccatttctccattcagtcagacgtgcaatcaacaaatatccctcagcagattatgcc
ctaaaatgtcctaatgtgacctcttccagctcaaagaagtttcaggaagaactcctcctt
cctaaaggatctgaggtggaggcagaaaatagtgacttctctgatgaatatgatttccct
gagcatcatgtgcttattttagagggcaatcatagtgataattctggaaatgttcttgat
ttcatccaagagctaactcgtctctttgcgactggagaagtcttgataaatgatcaagaa
gaaccatgttcaagtgaaaataccaccatcactgaagatgatcagaaaactaacaaagat
gatggagacataagatga
DBGET
integrated database retrieval system
