Monodelphis domestica (gray short-tailed opossum): 100031676
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Entry
100031676 CDS
T01031
Symbol
NDC1, TMEM48
Name
(RefSeq) NDC1 transmembrane nucleoporin
KO
K14315
nucleoporin NDC1
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03013
Nucleocytoplasmic transport
mdo05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100031676 (NDC1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100031676 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100031676 (NDC1)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100031676 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
100031676
NCBI-ProteinID:
XP_007505940
UniProt:
H9H7Z7
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Position
Un
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AA seq
701 aa
AA seq
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MATASAAVSAPAPPAAPPPSAPGLGSSRCPANAERDLLCRVLGWRIVNSIIWSVLLLPVC
TMAFVIFSSLNILHPIQWISDAFHDLYGSCVIFYLLLLSMVIVVISVFNVEFYTVVPSIP
CSRLALLGKIVHPQQVMHSLVHSAMGMLMVWCAAVMTKEQYHVLAVPCTDSSSLDSKAAQ
ACLNERHLFLLLSGAFMGYSYSLLYFVNNMNYLPFPIIQQYKLLRFRRVLPLLLRHSAVE
SLYLVRNFCGFYYFLGYIPKAWISTAMDLHKDEKQHPLDSLAGLLDLSLLYHVWLCGVFL
LITWYITWVLFKIHATEAHVFPVQPMFTGDLEECLPRVLSANSPLITKYLALQDLMLLSQ
YSPSRRQEVFSLSQPGGHPHNWVAISRECLALLNDLTQKLVMYQEAAAANGRVKTLASPV
DSNKPTLVEEEIAFQTPKSSVMSKTLMPSLSKASLFSPKFASPDASNTAGSPFSTNVANR
VVGVLDLNSAMYEASQSPYLRRRGPRLWTALTDLQGNEPSQSPSLALSPVHRVATHRGRG
QPNMLYLWLQNKLEQMKSFLSRRVLIVYFFSKHPEASIQALFSDAQMHIWALEGLSHLVA
ASFTEDRFGVVQTTLPAILSTLLTLQEAVDKHFKLPHASSRPPRTSGSFMDTSYKTLRFA
LRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggccacggcctcggccgccgtcagcgccccggctcccccggcagccccgccaccctcg
gctccaggcctggggtcctcccgctgcccggccaacgcagagcgagacctcctctgtcgg
gttcttggctggaggatagtcaacagcatcatctggtctgtcctccttctccccgtctgc
accatggcctttgtcatcttcagcagcctcaacatactccatccaatccagtggatctca
gacgccttccatgatctctatggttcctgcgtcatcttctacctcctgctgctgtcgatg
gtgatcgtcgtcatcagcgtcttcaatgtcgagttttacacggtggtgccgtccatcccc
tgctcccgcctggccttgcttgggaagattgtccacccccagcaagtgatgcactccctg
gtgcactcggccatgggcatgctgatggtgtggtgcgcggccgtgatgaccaaggaacag
taccacgtgctggccgtgccctgtaccgactccagcagcttggacagcaaggcggcccag
gcctgcttgaacgagcgtcacctcttcctgctgctgtctggagccttcatgggttatagt
tacagcctcctctattttgtgaacaacatgaactatctgcccttccccatcatacagcaa
tacaagctcctacggttccgaagagtcctgcccctgctcctcaggcacagcgccgtggag
tccctgtacctggtcaggaacttctgcggcttctactattttctgggctatatccccaaa
gcatggatcagcactgcgatggacctccataaagacgagaagcagcatcccctggacagc
ctggccgggctcttggacctctccttgctgtaccacgtgtggctctgcggggtctttctt
ctgataacctggtacatcacctgggtactcttcaagattcatgccacggaggcccacgtc
ttccctgttcagcccatgtttacaggagatttggaagaatgcttacccagagtcttaagt
gccaactctcccctcatcacaaagtatttggccttacaggacctgatgctgctgtctcag
tactccccttccaggcgacaagaagttttcagcctcagccaaccaggtgggcacccccac
aattgggtggccatatctcgtgagtgtttggctcttctcaatgacctgactcagaaactc
gtgatgtaccaagaagctgctgccgccaatgggagagtgaagaccctggccagtcctgtc
gactccaataagcccactctggtggaagaagaaattgcttttcagactcccaaatccagt
gtgatgtcgaagactttgatgccatcattatcaaaagcatccctcttttctcccaaattt
gcttcccctgatgcttcaaacacagccggctctcctttcagcaccaatgtagcgaatcga
gtagtgggggtcctagatctcaactctgccatgtacgaggcttcccagagcccttatcta
agaagaagagggccaagactatggactgcccttacagatctgcagggtaatgagccatca
cagagcccttccttggccctttcccctgttcatcgtgtggccacccatcgaggcagaggc
cagcccaacatgctgtatctgtggctgcagaataaactggagcagatgaagagcttcctg
tccaggcgagtgttgatcgtctacttcttcagcaagcatcctgaggcctccatccaggca
cttttttcagatgctcaaatgcacatctgggcattagaaggtttgtcccacttggtagca
gcatccttcaccgaagacagatttggcgttgtccagaccacactgcctgccattctgagc
actctgttgacgctgcaagaggcagtagataaacacttcaagctgccacacgcgtccagc
agaccgccccggacctccggaagcttcatggatacctcttacaagacgctgaggtttgcg
ctccgggcctccctgaaaacggccatctacaggataacaaccacttttggagaacatctc
aacgcggtacaggcatctgccgagcatcagaaaagacttcaacagttcttggagttcaaa
gaatag
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